View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10058_low_5 (Length: 475)
Name: NF10058_low_5
Description: NF10058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10058_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 35353980 - 35354422
Alignment:
| Q |
1 |
acttactcaaatatgatactgcatttgtcatt---acaaaaatatttttatgacnnnnnnnctatttactttaattttttgatgaagtttttgtttgtcg |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
35353980 |
acttactcaaatatgatactgcatttgtcatttttacaaaaatatttttatgaaaaaataactatttactttaattttttgataaagtttttgtttgtcg |
35354079 |
T |
|
| Q |
98 |
cttatagttcatatatttagcatgaattttgaaacatatagtaatgttttgatattgactaacatattattctctgtctttgtctttgtctttgatgtga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35354080 |
cttatagttcatatatttagcatgaattttgaaacatatagtaatgttttgatattgactaacatattattctctgtc------tttgtctttgatgtga |
35354173 |
T |
|
| Q |
198 |
cttggttatggacataaattaagttcatgattctaagcccgtggattgctcatagcatgtactctttcatatggggtgaaagggatccagtgtaccatgt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354174 |
cttggttatggacataaattaagttcatgattctaagcccgtggattgctcatagcatgtactctttcatatggggtgaaagggatccagtgtaccatgt |
35354273 |
T |
|
| Q |
298 |
catatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35354274 |
catatttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaaa |
35354373 |
T |
|
| Q |
398 |
ggccttgaattcgaacaagttgatagagaaaccaattggttagttccaa |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35354374 |
ggccttgaattcgaacaagttgatagagaaaccaattggttagttccaa |
35354422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 202 - 446
Target Start/End: Original strand, 35369212 - 35369456
Alignment:
| Q |
202 |
gttatggacataaattaagttcatgattctaagcccgtggattgctcatagcatgtactctttcatatggggtgaaagggatccagtgtaccatgtcata |
301 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||| ||||||| || ||||| |||||||||||||||| ||||||||| ||| | | || ||||| |
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|
| T |
35369212 |
gttatggacactaattaagttcgtgattctaatcccatggattggccacagcatatactctttcatatgggttgaaagggacccaatacaatatctcata |
35369311 |
T |
|
| Q |
302 |
tttccttttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaaaggcc |
401 |
Q |
| |
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| ||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||| || ||||||||| ||| |||||||| |||||||||||| ||| |
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|
| T |
35369312 |
tgtccttttatattggtcagaatgctacacaatcagatttggatttctatctcacgatatgaaactgctagaggcaaaagcaaaattgttgacaaaagcc |
35369411 |
T |
|
| Q |
402 |
ttgaattcgaacaagttgatagagaaaccaattggttagttccaa |
446 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||||| |
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|
| T |
35369412 |
ttgaatttgaacaagtcgatagagaaaccaattggttaattccaa |
35369456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 208 - 429
Target Start/End: Original strand, 35378102 - 35378323
Alignment:
| Q |
208 |
gacataaattaagttcatgattctaagcccgtggattgctcatagcatgtactctttcatatggggtgaaagggatccagtgtaccatgtcatatttcct |
307 |
Q |
| |
|
||||||| | |||||| ||||| ||| ||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||| || ||||||||||| |
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|
| T |
35378102 |
gacataattaaagttcgtgattgtaatcccatggattgctcatagcatatacactttcatatggggtgaaagggacccagtatactatatcatatttcct |
35378201 |
T |
|
| Q |
308 |
tttatgttgatcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaaaggccttgaat |
407 |
Q |
| |
|
||| ||| |||||||||||||||| || ||||||| |||| | ||||| || |||||||||||||| |||| || |||||||||||||||||||||| |
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|
| T |
35378202 |
tttgcattggtcagaatgctacacaatcaaatttggacttctgtctcacgctatcaaactgctaaaggcaaaaacagaattgttgacaaaggccttgaat |
35378301 |
T |
|
| Q |
408 |
tcgaacaagttgatagagaaac |
429 |
Q |
| |
|
|||||||||| || |||||||| |
|
|
| T |
35378302 |
tcgaacaagtcgacagagaaac |
35378323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 217 - 438
Target Start/End: Original strand, 19683562 - 19683783
Alignment:
| Q |
217 |
taagttcatgattctaagcccgtggattgctcatagcatgtactctttcatatggggtgaaagggatccagtgtaccatgtcatatttccttttatgttg |
316 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||| | || ||| ||| || ||||||| |||| ||| ||| |
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|
| T |
19683562 |
taagttcgtgattctaagcccgtggattgctcatagcatatactcttttatatgggtggaacgagacccaacctactatctcatattcccttatatattg |
19683661 |
T |
|
| Q |
317 |
atcagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaaaggccttgaattcgaacaag |
416 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||| |
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|
| T |
19683662 |
gtcagaatgctacataatcagatatggatttctatctcacgctaccaaactgctaaaggaaaaagaagaattgttgacaaaggcctggaattcgaccaag |
19683761 |
T |
|
| Q |
417 |
ttgatagagaaaccaattggtt |
438 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
19683762 |
tcgacagagaaaccaattggtt |
19683783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 438
Target Start/End: Complemental strand, 19632779 - 19632560
Alignment:
| Q |
219 |
agttcatgattctaagcccgtggattgctcatagcatgtactctttcatatggggtgaaagggatccagtgtaccatgtcatatttccttttatgttgat |
318 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||| |||||||||||||||| ||| ||| ||| ||| || |||||||||||| |||||| | |
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|
| T |
19632779 |
agttcgtgattctaagtccatggattgctcatagcatatactctttcatatgggtggaacaggacccatcatactatatcatatttccttatatgtttgt |
19632680 |
T |
|
| Q |
319 |
cagaatgctacacaaccagatttggatttctatttcacgttaccaaactgctaaaggaaaaagcaagattgttgacaaaggccttgaattcgaacaagtt |
418 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||||| || |||||||||||||| |||| || |||||||||||| |||| |||||||||||||| |
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|
| T |
19632679 |
gagaatgctacacagccagatctggatttctatctcacgctatcaaactgctaaaggcaaaaacagaattgttgacaaatgcctagaattcgaacaagtc |
19632580 |
T |
|
| Q |
419 |
gatagagaaaccaattggtt |
438 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
19632579 |
gacagagaaaccaactggtt |
19632560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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