View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10058_low_6 (Length: 374)
Name: NF10058_low_6
Description: NF10058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10058_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 37960334 - 37960682
Alignment:
| Q |
19 |
cccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctataatcagacatc |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37960334 |
cccccacccaaaatctgtctcataaacagccaatttcggtgaaccagcaaccacagttacagacttaccaggttttgacatttccctataatcagacatc |
37960433 |
T |
|
| Q |
119 |
aatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattttttccaattaactcat |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960434 |
aatgtttcagctcctaacaaagcatgactctttaaatgtcttatcttcttttcgataccaattgaagccgaaacaatcccattttttccaattaactcat |
37960533 |
T |
|
| Q |
219 |
ctctctttacagccacagtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcacgacaatctgcaagaaacacaaa |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960534 |
ctctctttacagccacggtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcacgacaatctgcaagaaacacaaa |
37960633 |
T |
|
| Q |
319 |
gtagcagtgatcatcaagatcaacacaatcaccttcatcacctttgcta |
367 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37960634 |
gtagcagtgatcatcaagatcaacacaatcaccttcatcacttttgcta |
37960682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 37915860 - 37915566
Alignment:
| Q |
20 |
ccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctataatcagacatca |
119 |
Q |
| |
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|||||||||||||| || ||||||||| | | ||| || || |||| ||||| | | ||| ||||| |||||| |||||||||||||||| ||||| |
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| T |
37915860 |
ccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatca |
37915761 |
T |
|
| Q |
120 |
atgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattttttccaattaactcatc |
219 |
Q |
| |
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| |||||| |||| ||||| |||| |||||| |||| |||||||||| ||||||| || ||| ||| || ||| |||| |||||||| ||||||| | |
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| T |
37915760 |
acgtttcaactcccaacaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacc |
37915661 |
T |
|
| Q |
220 |
tctctttacagccacagtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcacgacaatctgcaagaaaca |
314 |
Q |
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|| |||||| | ||||||||||| |||||||| ||||||||||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| |
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| T |
37915660 |
cctatttacaactacagtataagaagcaagacagtttccaaaataagttttcgataatgaaaattcacgacgatcacgacaatctgcaaaaaaca |
37915566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 37907707 - 37907422
Alignment:
| Q |
20 |
ccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctataatcagacatca |
119 |
Q |
| |
|
|||||||||||||| || ||| ||||| | | ||| ||||| ||||||||||| || || |||||||||||| | | |||| ||||||||| |||| |
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| T |
37907707 |
ccccacccaaaatcagtctcacaaacatcaagtttaggtgacccagcaaccactacaaatgagttaccaggttttaataattccatataatcaggtatca |
37907608 |
T |
|
| Q |
120 |
atgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattttttccaattaactcatc |
219 |
Q |
| |
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| ||||||||| |||||||||||| ||||||||||| |||||||||||||| |||| || || || | |||||| |||| |||| ||| ||||||| | |
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| T |
37907607 |
acgtttcagcttctaacaaagcatcactcttaaaatctcttatcttcttttaaatagcattt---gctgcaacaataccatctttttcaactaactcacc |
37907511 |
T |
|
| Q |
220 |
tctctttacagccacagtataagatgcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcacgacaatctgcaa |
308 |
Q |
| |
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|| |||||| |||| ||||||| |||| ||||||||||||||||| ||| | |||||| |||||| | |||||||||||||||| |
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| T |
37907510 |
cctttttacaaccacgttataagaggcaacacaatttccaaaataagatttagctaatgaaaattcagaacggtcacgacaatctgcaa |
37907422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 37954525 - 37954613
Alignment:
| Q |
19 |
cccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctat |
107 |
Q |
| |
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|||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| | | ||||||||||||||||||||||||||||| |
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| T |
37954525 |
cccccatccaaaatctgtctcataaacagccaaattcggtgaaccagcaatcacattaacagacttaccaggttttgacatttccctat |
37954613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 334
Target Start/End: Complemental strand, 3783877 - 3783688
Alignment:
| Q |
145 |
actcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattttttccaattaactcatctctctttacagccacagtataagat |
244 |
Q |
| |
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|||||| |||| |||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||| ||||||| | ||||||||| ||||| | | | |
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| T |
3783877 |
actcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccatttgttccaactaactcagccctctttacaaccacaattttactg |
3783778 |
T |
|
| Q |
245 |
gcaagacaatttccaaaataagtttttggtaatgacaattcaccgctatcacgacaatctgcaagaaacacaaagtagcagtgatcatca |
334 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| | |||| |||||||||||||||||| |||| || |||||||| |||||||| |
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| T |
3783777 |
gcaagacaatttccaaaataatttttgggtaatgaaatttcaggactatcacgacaatctgcatgaaataccaagtagcatagatcatca |
3783688 |
T |
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