View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10059_high_2 (Length: 286)
Name: NF10059_high_2
Description: NF10059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10059_high_2 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 41317295 - 41317026
Alignment:
| Q |
7 |
aagcatagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41317295 |
aagcatagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatccaattcttcattcttcattccattgggaagcttccaatcaaagtgat |
41317196 |
T |
|
| Q |
107 |
aaagtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgt |
206 |
Q |
| |
|
||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41317195 |
aaagtaacttagcaagaggcagctcaacattgggcaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgt |
41317096 |
T |
|
| Q |
207 |
gcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41317095 |
gcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
41317026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 41329333 - 41329067
Alignment:
| Q |
10 |
catagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaa |
109 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| |
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|
| T |
41329333 |
cataggtcgtgttttctacctacagtaatcccaaaaaactcagtcatatcaagttcttgatggctcattccattgggaagcttccaatcaaagtgataaa |
41329234 |
T |
|
| Q |
110 |
gtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcc |
209 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
41329233 |
gtaacttagcaagaggcagctcaacattgggtatggcaaatgaaatacctggacacatccttcttccagcaccaaatggtatgaattcgaagtccgtgcc |
41329134 |
T |
|
| Q |
210 |
tttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
276 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41329133 |
tttgaaatcaattggactattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
41329067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 41325359 - 41325090
Alignment:
| Q |
7 |
aagcatagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggt |
106 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41325359 |
aagcatagattgtgctttctacctgcagtaatcccaaatgactcggtcatatctagttcttcattcttcattttattgggaagcttccaatcaaagtggt |
41325260 |
T |
|
| Q |
107 |
aaagtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgt |
206 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |||| ||||| || |
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|
| T |
41325259 |
aaagtaaactagcaagaggcaattcaacgttgggtaaggcaaatgcaattccgggacacatccttcttccagcaccaaatggtatgtattcaaagtctgt |
41325160 |
T |
|
| Q |
207 |
gcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
276 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
41325159 |
gcctttgaaatcaattggactattaacaaacctctcaggtttaaaactttcagcatcaacccaatacctt |
41325090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 41333266 - 41333000
Alignment:
| Q |
10 |
catagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaa |
109 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
41333266 |
catagatcgtgctttcttcctacagtaatcccaaatgactcggtcatatctagttcttcattcttcattttattgggaagcttccaatcaaagtggcaaa |
41333167 |
T |
|
| Q |
110 |
gtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcc |
209 |
Q |
| |
|
|||| ||||||||| | |||||| || |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41333166 |
gtaattgagcaagaggtagctcaatgtttggtagggcaaatgcaattccgggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcc |
41333067 |
T |
|
| Q |
210 |
tttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
276 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41333066 |
tttgaattcaattgtgctattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
41333000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 41311496 - 41311231
Alignment:
| Q |
11 |
atagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaag |
110 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
41311496 |
ataggtcgtgttttctacctacagtaatcccaaatgactcagccatatctagttcttcattcttcattttattgggaagcttccaatcaaaccggtaaag |
41311397 |
T |
|
| Q |
111 |
taaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcct |
210 |
Q |
| |
|
||| ||||||||| | |||||| || |||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
41311396 |
taattgagcaagaggtagctcaatgtttggtagggcaaatgcaattccgggacacatcctccttccagcaccaaatggtatgtattcaaagtccgtgcct |
41311297 |
T |
|
| Q |
211 |
ttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaatacctt |
276 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41311296 |
ttgaattcaattgtgctattaacaaacctctcaggtttaaatctctcagcttcaacccaatacctt |
41311231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 40 - 273
Target Start/End: Complemental strand, 41338043 - 41337810
Alignment:
| Q |
40 |
ccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaatattgg |
139 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||||| ||||| |||||||||||||| ||||| || |||||||||||| ||||| ||||| |
|
|
| T |
41338043 |
ccaaatgattcagtcatatcaagttcttgatggctcattccatttggaagtttccaatcaaagtgataaagcaacttagcaagaggcagctcaacattgg |
41337944 |
T |
|
| Q |
140 |
gtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaacaaacct |
239 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41337943 |
gcaaggcaaatgcaatacctggacacatccttcttccagcaccaaatggtattaattcaaagtctgtgcctttgaaatcaattgagctattaacaaacct |
41337844 |
T |
|
| Q |
240 |
ctcaggtttaaaactctcagcttcaacccaatac |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41337843 |
ctcaggtttaaaactctcagcttcaacccaatac |
41337810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 41305604 - 41305341
Alignment:
| Q |
10 |
catagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaa |
109 |
Q |
| |
|
||||| ||||||||||| ||| || ||| |||||||||||| |||||||||||||||| || ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
41305604 |
cataggtcgtgttttcttcctacactaagcccaaatgactcggtcatatcaagttcttgatggctcattccgttgggaagcttccaatcaaagttataaa |
41305505 |
T |
|
| Q |
110 |
gtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcc |
209 |
Q |
| |
|
|||| ||||||||| | |||| ||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||| ||||| |
|
|
| T |
41305504 |
gtaattcagcaagaggaagttcaacatttgataaggcaaatgcaatgcccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcc |
41305405 |
T |
|
| Q |
210 |
tttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaatac |
273 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41305404 |
tttgaaatcaattgagctattaacaaacctctcgggtttaaaactctcagcttcaacccaatac |
41305341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 41287458 - 41287196
Alignment:
| Q |
10 |
catagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaa |
109 |
Q |
| |
|
||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
41287458 |
cataggtcatgttttcttcctacagtaatcccaaatgactcagtcatatcaagttcttcacacttcattccattgagaagcttccaatcaaagtgataaa |
41287359 |
T |
|
| Q |
110 |
gtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcc |
209 |
Q |
| |
|
|||| ||||||||| | ||||| ||||||| | | || ||||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
41287358 |
gtaattcagcaagaggaagctcaacgttgggtatgccgaaggcaatgcctgggcacatcctccttccagcaccaaatggtatgtattcgaagtctgtgcc |
41287259 |
T |
|
| Q |
210 |
tttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaata |
272 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| ||| |||||||||| |||||||| |
|
|
| T |
41287258 |
attgaaatcaattggactattaacaaacctctcgggtttgaaattctcagcttcgacccaata |
41287196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 31177541 - 31177811
Alignment:
| Q |
7 |
aagcatagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggt |
106 |
Q |
| |
|
|||||||| || |||||||| || ||| || ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31177541 |
aagcataggtcatgttttcttactacagcaagcccaaatgactcagtcatatctagttcttcattcttcattccattaggaagcttccaatcaaagtggt |
31177640 |
T |
|
| Q |
107 |
aaagtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgt |
206 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| |||| ||||||| || ||||||||||| || ||||||||||| || |||||| | || |||| || |
|
|
| T |
31177641 |
aaagtaactgagcaagaggcagctcaatgttggataagccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtactcaaagtttgt |
31177740 |
T |
|
| Q |
207 |
gcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaataccttt |
277 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31177741 |
acctttgaaatcaattgtgctattaacaaacctctcgggtttaaaactctcagcttctgcccaataccttt |
31177811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 31187604 - 31187874
Alignment:
| Q |
7 |
aagcatagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggt |
106 |
Q |
| |
|
|||||||| || |||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31187604 |
aagcataggtcatgttttcttcctatagccatcccaaatgactcagtcatatctagttcttcattcttcattccattaggaagcttccaatcaaagtggt |
31187703 |
T |
|
| Q |
107 |
aaagtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgt |
206 |
Q |
| |
|
||||||| ||||||||||| |||||| |||| |||| ||||||| || ||||||||||| || ||||||||||| || |||||| |||| || | || |
|
|
| T |
31187704 |
aaagtaactgagcaagaggcagctcaatgttggataagccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgt |
31187803 |
T |
|
| Q |
207 |
gcctttgaaatcaattgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaataccttt |
277 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31187804 |
gcctttgaaatcaattgtgctattgagaaacctctcaggtttaaaactctcagcttctgcccaataccttt |
31187874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 31226160 - 31225904
Alignment:
| Q |
21 |
ttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaagtaaactagca |
120 |
Q |
| |
|
|||||| ||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
31226160 |
ttttcttcctacagaaagcccaaatgactcagtcatatctagttcttcattcttcattccattaggaagcttccaatcaaagtggtaaagtaactgagca |
31226061 |
T |
|
| Q |
121 |
agaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaa |
220 |
Q |
| |
|
||||||| |||||| |||| |||| ||||||| || ||||||||||| || ||||||||||| || |||||| |||| || | |||||||||||||||| |
|
|
| T |
31226060 |
agaggcagctcaatgttggataagccaaatgccatgcctggacacattcttcttccagcaccgaacggtatgtattcaaaatttgtgcctttgaaatcaa |
31225961 |
T |
|
| Q |
221 |
ttgggctattaacaaacctctcaggtttaaaactctcagcttcaacccaataccttt |
277 |
Q |
| |
|
||| |||||| | |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31225960 |
ttgtgctattgagaaacctctcaggtttaaaactctcagcttctgcccaataccttt |
31225904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 39 - 275
Target Start/End: Complemental strand, 41367416 - 41367180
Alignment:
| Q |
39 |
cccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaatattg |
138 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| | ||| | ||| || ||| |
|
|
| T |
41367416 |
cccaaatgactccgtcatatctaattcttcattcttcattccatttggaagcttccaatcaaaatggtaaagtaactgagctaaaggtagctctatgttg |
41367317 |
T |
|
| Q |
139 |
ggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaacaaacc |
238 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||| ||| | |
|
|
| T |
41367316 |
ggtaaggcaaatgcaatacccagacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattcggctattaagaaatc |
41367217 |
T |
|
| Q |
239 |
tctcaggtttaaaactctcagcttcaacccaatacct |
275 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||| |
|
|
| T |
41367216 |
tctcaggcttaaaactcttggcatcaacccaatacct |
41367180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 41370133 - 41369921
Alignment:
| Q |
7 |
aagcatagatcgtgttttctacctgcagtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggt |
106 |
Q |
| |
|
||||||| ||| | |||||| |||| |||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41370133 |
aagcataaatcatattttcttactgctgtaatcccaaatgattcagtcatatccaattcttcattcttcatttcattgggaagcttccaatcaaagtggt |
41370034 |
T |
|
| Q |
107 |
aaagtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgt |
206 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| |||| ||| ||||||||||||||||| || ||| ||||||||||| |||| ||||| | |
|
|
| T |
41370033 |
aaagtaaactagcaagaggcaactcaacgttaggtaagccaaacataatgcctggacacatcctcctccctgcatcaaatggtatgtattcaaagtctat |
41369934 |
T |
|
| Q |
207 |
gcctttgaaatca |
219 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41369933 |
acctttgaaatca |
41369921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 41311759 - 41311706
Alignment:
| Q |
48 |
ctcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
41311759 |
ctcagtcatatcaagttcttcattattcattccattgggaagctttcaatcaaa |
41311706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 41333497 - 41333428
Alignment:
| Q |
34 |
gtaatcccaaatgactc--agtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaa |
101 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
41333497 |
gtaagcccaaatgactctcaatcatatcaagttcttcattattcattccattgggaagctttcaatcaaa |
41333428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 41329594 - 41329489
Alignment:
| Q |
62 |
gttcttcattcttcattccattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaatattgggtaaggcaaatgcaatacctgg |
161 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||||||||| |||||||| ||||||| ||| |||| ||||| ||| |||||||||| | ||| |
|
|
| T |
41329594 |
gttcttcattattcattccattggaaagctttcaatcaaagtcataaagtaattcagcaagacgcagttcaacattggctaaaccaaatgcaatgcttgg |
41329495 |
T |
|
| Q |
162 |
acacat |
167 |
Q |
| |
|
|||||| |
|
|
| T |
41329494 |
acacat |
41329489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 34 - 278
Target Start/End: Original strand, 17248448 - 17248692
Alignment:
| Q |
34 |
gtaatcccaaatgactcagtcatatcaagttcttcattcttcattccattgggaagcttccaatcaaagtggtaaagtaaactagcaagaggcaactcaa |
133 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
17248448 |
gtaatcccaaatgactcggtcatatctagatcttcattcttcatttcattgggaagcttccaatcaaaatggtaaagtaattgagcaagaggcaactcaa |
17248547 |
T |
|
| Q |
134 |
tattgggtaaggcaaatgcaatacctggacacatcctccttccagcaccaaatggtatgaattcgaagtccgtgcctttgaaatcaattgggctattaac |
233 |
Q |
| |
|
| ||||||| | |||||||||| || ||||| ||||||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
17248548 |
tgttgggtatgccaaatgcaatgcccggacaaatcctccttccagcaccaaatggtatgtattcgaaattcatgcctttgaaatcaattgggctattaaa |
17248647 |
T |
|
| Q |
234 |
aaacctctcaggtttaaaactctcagcttcaacccaatacctttg |
278 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17248648 |
aaacctttcaggtttgaaactctcagcttcaacccaatacctttg |
17248692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 62054 - 62085
Alignment:
| Q |
73 |
ttcattccattgggaagcttccaatcaaagtg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
62054 |
ttcattccattgggaagcttccaatcaaagtg |
62085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 104
Target Start/End: Original strand, 12609806 - 12609837
Alignment:
| Q |
73 |
ttcattccattgggaagcttccaatcaaagtg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
12609806 |
ttcattccattgggaagcttccaatcaaagtg |
12609837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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