View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10059_low_3 (Length: 278)
Name: NF10059_low_3
Description: NF10059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10059_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 31388729 - 31388997
Alignment:
| Q |
19 |
agtatcagtcgcatgatgttacttttgaataaaagggaaa--------------ctttcaaggaaactttcattaattatttacccgttgagtctgattt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31388729 |
agtatcagtcgcatgatgttacttttgaataaaagggaaagtttcaaggagtttctttcaaggaaactttcattaattatttacccgttgcgtctgattt |
31388828 |
T |
|
| Q |
105 |
cttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaactgt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31388829 |
cttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaactgt |
31388928 |
T |
|
| Q |
205 |
tgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcctatgcttct |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
31388929 |
tgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcttatgattct |
31388997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 31461400 - 31461664
Alignment:
| Q |
19 |
agtatcagtcgcatgatgttacttttgaataaaagggaaactttcaaggaaa--ctttca--------ttaattatttacccgttgagtctgatttcttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
31461400 |
agtatcagtcgcatgatgttacttttgaataaaagggaaactttcaaggagattctttcaaggaaactttcattatttaccggttgagtctgatttcttg |
31461499 |
T |
|
| Q |
109 |
tgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaactgttgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31461500 |
tgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattctaactgttgaa |
31461599 |
T |
|
| Q |
209 |
ttgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcctatgcttct |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
31461600 |
ttgatgaagatcaatttgatgctatctattattgctacaaccttttgttattctcctatgattct |
31461664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 40844545 - 40844721
Alignment:
| Q |
94 |
gagtctgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaa |
193 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
40844545 |
gagtatgatttcttgtgctgcctttgctttaatgtctttttgcttatcaagacaaattgatcttggttttgaaactgatctca---atttcttccttgga |
40844641 |
T |
|
| Q |
194 |
attctaactgttgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctcctatgcttct |
273 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| || || |||| ||||| ||||||| |||| |||| |
|
|
| T |
40844642 |
attctaactgttcaattgatgaagatcaatttgatgctatctattgtttctgcaatattttgctattctcttatgattct |
40844721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 263
Target Start/End: Original strand, 31496103 - 31496267
Alignment:
| Q |
99 |
tgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaatttgatctcctagatttcttccttcaaattct |
198 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| ||||||||| | || |||||||||||||||| ||||||||| ||||||||||| |||| | |
|
|
| T |
31496103 |
tgatttcttgtgttgcctttgctttaatgtctttttgcttatcaagacagatcgatcttggttttgaatctgatctcctcaatttcttccttggaatttt |
31496202 |
T |
|
| Q |
199 |
aactgttgaattgatgaagatcaatttgatgctatctattattgctacaatcttttgttattctc |
263 |
Q |
| |
|
||| ||| |||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
31496203 |
aaccgttcaattgatgaagatcaatttgattctatctattgttgctgcaatcttatgttattctc |
31496267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 140199 - 140127
Alignment:
| Q |
92 |
ttgagtctgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaat |
167 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||| ||||||||| |||||| | ||| |||||||| |
|
|
| T |
140199 |
ttgagtctgatttct---gcaggttttgctttaatgtatttttacttatcaagacaaattgttattgattttgaat |
140127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 148220 - 148148
Alignment:
| Q |
92 |
ttgagtctgatttcttgtgcagcttttgctttaatgtcttttttcttatcaaggaaaattgatcttggttttgaat |
167 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||| ||||||||| |||||| | ||| |||||||| |
|
|
| T |
148220 |
ttgagtctgatttct---gcaggttttgctttaatgtatttttacttatcaagacaaattgttattgattttgaat |
148148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University