View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1005_low_1 (Length: 516)

Name: NF1005_low_1
Description: NF1005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1005_low_1
NF1005_low_1
[»] chr3 (58 HSPs)
chr3 (95-321)||(6162667-6162893)
chr3 (225-516)||(53827438-53827742)
chr3 (333-516)||(47064982-47065165)
chr3 (310-516)||(44836228-44836442)
chr3 (107-227)||(6137615-6137735)
chr3 (95-227)||(13284738-13284870)
chr3 (387-499)||(42950808-42950922)
chr3 (95-227)||(6131812-6131944)
chr3 (420-516)||(33449893-33449986)
chr3 (228-319)||(19866733-19866824)
chr3 (228-323)||(44836461-44836556)
chr3 (255-347)||(42381642-42381734)
chr3 (226-342)||(42994859-42994975)
chr3 (228-304)||(44833470-44833546)
chr3 (227-311)||(47064863-47064947)
chr3 (228-319)||(15041993-15042084)
chr3 (455-516)||(42950750-42950811)
chr3 (228-292)||(4969875-4969939)
chr3 (225-300)||(11342887-11342962)
chr3 (228-323)||(42950971-42951066)
chr3 (228-322)||(35995137-35995231)
chr3 (228-306)||(42947375-42947453)
chr3 (228-306)||(53814561-53814639)
chr3 (228-305)||(15040681-15040758)
chr3 (255-319)||(34086827-34086891)
chr3 (228-319)||(7666949-7667040)
chr3 (228-319)||(11343784-11343876)
chr3 (420-483)||(37280828-37280891)
chr3 (228-319)||(50663875-50663966)
chr3 (420-483)||(53561262-53561325)
chr3 (455-499)||(42381740-42381784)
chr3 (420-483)||(7953577-7953640)
chr3 (228-343)||(16931446-16931561)
chr3 (228-306)||(2325561-2325639)
chr3 (229-275)||(13843624-13843670)
chr3 (418-475)||(19234558-19234615)
chr3 (426-482)||(25577371-25577427)
chr3 (225-307)||(19872140-19872222)
chr3 (225-295)||(40517534-40517604)
chr3 (234-306)||(7665739-7665811)
chr3 (234-306)||(34082845-34082917)
chr3 (420-476)||(43687604-43687660)
chr3 (420-475)||(14264919-14264974)
chr3 (424-483)||(36722139-36722198)
chr3 (256-319)||(39688739-39688802)
chr3 (228-275)||(44430418-44430465)
chr3 (420-483)||(48088336-48088399)
chr3 (229-306)||(42993567-42993644)
chr3 (228-301)||(54528961-54529034)
chr3 (444-483)||(6465118-6465157)
chr3 (227-306)||(35485242-35485321)
chr3 (424-483)||(39417738-39417796)
chr3 (228-275)||(39685212-39685259)
chr3 (232-321)||(39649867-39649956)
chr3 (255-319)||(3860826-3860889)
chr3 (420-472)||(8634188-8634240)
chr3 (248-284)||(35106003-35106039)
chr3 (226-306)||(39645772-39645852)
[»] chr4 (59 HSPs)
chr4 (227-516)||(33164280-33164584)
chr4 (325-516)||(46817239-46817432)
chr4 (228-483)||(36172165-36172402)
chr4 (228-455)||(36217870-36218110)
chr4 (312-504)||(55312204-55312404)
chr4 (226-322)||(51718172-51718268)
chr4 (227-319)||(34235691-34235783)
chr4 (228-323)||(28798128-28798223)
chr4 (228-319)||(40450931-40451022)
chr4 (228-323)||(53267784-53267879)
chr4 (236-306)||(36174579-36174649)
chr4 (227-319)||(24972389-24972481)
chr4 (255-323)||(42099509-42099577)
chr4 (420-483)||(17210647-17210710)
chr4 (231-306)||(24974146-24974221)
chr4 (228-319)||(36498906-36498997)
chr4 (226-319)||(12586182-12586276)
chr4 (245-306)||(53265809-53265870)
chr4 (226-306)||(40312794-40312874)
chr4 (226-306)||(40322870-40322950)
chr4 (420-483)||(21710918-21710981)
chr4 (420-483)||(23125317-23125380)
chr4 (420-483)||(27759012-27759075)
chr4 (424-483)||(31825639-31825698)
chr4 (231-306)||(36501865-36501940)
chr4 (225-275)||(628085-628135)
chr4 (225-306)||(46817432-46817513)
chr4 (330-402)||(12572691-12572763)
chr4 (227-323)||(12572802-12572898)
chr4 (420-474)||(13850246-13850300)
chr4 (418-475)||(18411969-18412026)
chr4 (426-483)||(49063349-49063406)
chr4 (228-301)||(55523725-55523798)
chr4 (431-475)||(31323705-31323749)
chr4 (228-319)||(636571-636662)
chr4 (420-483)||(42420531-42420593)
chr4 (227-302)||(55527917-55527992)
chr4 (228-306)||(12586798-12586875)
chr4 (441-483)||(31825393-31825435)
chr4 (228-306)||(45246981-45247059)
chr4 (225-306)||(23283211-23283292)
chr4 (438-483)||(24606132-24606177)
chr4 (415-476)||(32938652-32938713)
chr4 (228-301)||(38676939-38677012)
chr4 (258-319)||(40923406-40923467)
chr4 (234-275)||(40923925-40923966)
chr4 (229-301)||(27992116-27992188)
chr4 (226-306)||(45237409-45237489)
chr4 (420-475)||(13865773-13865828)
chr4 (420-483)||(14331484-14331547)
chr4 (228-307)||(51719773-51719852)
chr4 (228-302)||(28796620-28796694)
chr4 (228-314)||(38677654-38677740)
chr4 (228-301)||(27992309-27992382)
chr4 (226-275)||(37577271-37577320)
chr4 (228-301)||(54208180-54208253)
chr4 (333-365)||(28798073-28798105)
chr4 (228-292)||(37576543-37576607)
chr4 (228-304)||(47043991-47044067)
[»] chr5 (44 HSPs)
chr5 (224-516)||(40008708-40009013)
chr5 (227-516)||(3458013-3458285)
chr5 (308-516)||(19399616-19399826)
chr5 (227-319)||(6702369-6702461)
chr5 (226-306)||(19401999-19402079)
chr5 (232-319)||(30491782-30491869)
chr5 (256-323)||(1975285-1975352)
chr5 (225-300)||(17644606-17644681)
chr5 (227-319)||(5504735-5504827)
chr5 (239-323)||(19399501-19399585)
chr5 (229-319)||(4845302-4845392)
chr5 (227-321)||(34017604-34017698)
chr5 (228-305)||(34016002-34016079)
chr5 (227-306)||(1974155-1974234)
chr5 (420-483)||(7081654-7081717)
chr5 (420-483)||(15798737-15798800)
chr5 (258-305)||(30489753-30489800)
chr5 (228-301)||(1145141-1145214)
chr5 (420-481)||(33370005-33370066)
chr5 (228-321)||(38739387-38739480)
chr5 (228-304)||(759160-759236)
chr5 (234-306)||(6706035-6706107)
chr5 (420-483)||(4113873-4113936)
chr5 (228-319)||(33144171-33144262)
chr5 (418-483)||(10975313-10975378)
chr5 (228-301)||(11135741-11135814)
chr5 (224-301)||(36580219-36580296)
chr5 (424-475)||(2598719-2598770)
chr5 (440-483)||(36317693-36317736)
chr5 (227-301)||(6158948-6159021)
chr5 (439-493)||(17367731-17367785)
chr5 (228-306)||(28677886-28677964)
chr5 (228-273)||(763327-763372)
chr5 (421-473)||(12742113-12742165)
chr5 (421-473)||(12804928-12804980)
chr5 (257-301)||(33037386-33037430)
chr5 (440-483)||(22858368-22858411)
chr5 (420-483)||(23229387-23229450)
chr5 (420-483)||(25361238-25361301)
chr5 (227-273)||(17636343-17636389)
chr5 (226-287)||(40266607-40266669)
chr5 (228-304)||(4846929-4847006)
chr5 (227-287)||(1145895-1145955)
chr5 (213-297)||(6269221-6269305)
[»] chr8 (22 HSPs)
chr8 (226-516)||(43640753-43641053)
chr8 (310-516)||(28706882-28707090)
chr8 (255-516)||(33800273-33800549)
chr8 (226-307)||(33220786-33220867)
chr8 (228-319)||(23558970-23559061)
chr8 (228-306)||(5967237-5967315)
chr8 (229-319)||(9384617-9384707)
chr8 (226-275)||(9418585-9418634)
chr8 (226-283)||(37687335-37687392)
chr8 (227-319)||(34276191-34276283)
chr8 (420-483)||(16575062-16575125)
chr8 (424-483)||(40414107-40414166)
chr8 (420-483)||(43692510-43692573)
chr8 (227-307)||(34279560-34279640)
chr8 (227-306)||(4640795-4640874)
chr8 (234-288)||(9448715-9448769)
chr8 (225-283)||(33220021-33220078)
chr8 (420-483)||(14998759-14998822)
chr8 (227-306)||(43635129-43635208)
chr8 (228-305)||(37686616-37686693)
chr8 (227-273)||(31762240-31762286)
chr8 (239-289)||(43995919-43995969)
[»] chr7 (39 HSPs)
chr7 (231-516)||(26603950-26604248)
chr7 (258-516)||(48221481-48221746)
chr7 (333-516)||(30359822-30360005)
chr7 (422-516)||(2355658-2355752)
chr7 (311-478)||(20379437-20379612)
chr7 (228-323)||(20379651-20379746)
chr7 (228-319)||(38790884-38790974)
chr7 (231-306)||(5172-5247)
chr7 (228-323)||(38792031-38792126)
chr7 (228-337)||(31823589-31823698)
chr7 (420-483)||(39477824-39477887)
chr7 (228-319)||(44552689-44552780)
chr7 (227-306)||(1537246-1537325)
chr7 (420-483)||(8726999-8727062)
chr7 (420-483)||(18236934-18236997)
chr7 (227-313)||(30359704-30359788)
chr7 (228-283)||(42548161-42548216)
chr7 (228-285)||(5060848-5060905)
chr7 (422-483)||(7414652-7414713)
chr7 (420-476)||(31266900-31266956)
chr7 (420-483)||(28065782-28065845)
chr7 (424-483)||(40592102-40592161)
chr7 (228-306)||(19365395-19365473)
chr7 (228-306)||(26502431-26502509)
chr7 (228-306)||(26590205-26590283)
chr7 (232-306)||(38386178-38386252)
chr7 (228-289)||(25428731-25428792)
chr7 (420-472)||(13798684-13798736)
chr7 (231-306)||(41957005-41957079)
chr7 (228-314)||(26009369-26009455)
chr7 (228-289)||(28138759-28138820)
chr7 (327-394)||(2355584-2355650)
chr7 (225-304)||(5061730-5061809)
chr7 (420-483)||(12082424-12082487)
chr7 (228-286)||(10527004-10527062)
chr7 (446-476)||(11823870-11823900)
chr7 (226-284)||(42548781-42548839)
chr7 (228-289)||(28139452-28139513)
chr7 (225-262)||(31853315-31853352)
[»] chr6 (22 HSPs)
chr6 (227-516)||(35060694-35060974)
chr6 (226-312)||(17436034-17436120)
chr6 (227-307)||(31522534-31522614)
chr6 (228-306)||(14153354-14153432)
chr6 (226-323)||(14154560-14154657)
chr6 (420-516)||(28050777-28050867)
chr6 (420-483)||(800532-800595)
chr6 (227-306)||(32275771-32275850)
chr6 (228-306)||(17436541-17436619)
chr6 (228-306)||(32274184-32274262)
chr6 (229-321)||(4321723-4321815)
chr6 (228-301)||(23608427-23608500)
chr6 (255-306)||(14830419-14830470)
chr6 (420-476)||(4286581-4286637)
chr6 (420-483)||(3098153-3098216)
chr6 (422-483)||(5570640-5570701)
chr6 (424-468)||(14485421-14485465)
chr6 (245-321)||(25400850-25400926)
chr6 (481-516)||(14483516-14483551)
chr6 (228-301)||(806545-806618)
chr6 (228-301)||(14430944-14431017)
chr6 (278-306)||(31483693-31483721)
[»] chr1 (47 HSPs)
chr1 (228-516)||(50069001-50069312)
chr1 (333-516)||(45688445-45688628)
chr1 (226-516)||(11821158-11821459)
chr1 (308-516)||(47488764-47488974)
chr1 (342-516)||(17696335-17696510)
chr1 (224-319)||(28442918-28443013)
chr1 (227-306)||(39650195-39650274)
chr1 (228-305)||(45688308-45688385)
chr1 (227-303)||(3792559-3792635)
chr1 (228-304)||(45691050-45691126)
chr1 (228-300)||(45691196-45691268)
chr1 (228-300)||(45691338-45691410)
chr1 (228-306)||(28475982-28476060)
chr1 (226-306)||(28446530-28446610)
chr1 (228-319)||(33403113-33403204)
chr1 (419-483)||(21761020-21761084)
chr1 (228-312)||(49033725-49033808)
chr1 (420-483)||(3658021-3658084)
chr1 (228-306)||(33617644-33617722)
chr1 (418-483)||(15471056-15471121)
chr1 (418-483)||(21485416-21485481)
chr1 (228-305)||(28474792-28474869)
chr1 (418-483)||(39224990-39225055)
chr1 (255-319)||(35577511-35577575)
chr1 (420-483)||(26088839-26088902)
chr1 (228-319)||(48025556-48025647)
chr1 (227-301)||(2094367-2094441)
chr1 (228-305)||(3792454-3792532)
chr1 (420-483)||(18169388-18169451)
chr1 (420-483)||(41875668-41875731)
chr1 (420-483)||(48569195-48569258)
chr1 (226-305)||(50065476-50065555)
chr1 (227-289)||(5602943-5603005)
chr1 (228-301)||(37260918-37260991)
chr1 (255-306)||(35563532-35563583)
chr1 (420-483)||(48707561-48707624)
chr1 (228-306)||(33401408-33401486)
chr1 (227-301)||(35392109-35392183)
chr1 (227-306)||(35563363-35563438)
chr1 (441-483)||(49599639-49599681)
chr1 (240-301)||(35391487-35391548)
chr1 (228-292)||(3792296-3792360)
chr1 (282-320)||(45688382-45688419)
chr1 (420-470)||(46182348-46182398)
chr1 (231-284)||(9862914-9862967)
chr1 (433-482)||(18841824-18841873)
chr1 (458-505)||(27037702-27037746)
[»] chr2 (33 HSPs)
chr2 (229-516)||(12969035-12969340)
chr2 (258-512)||(22492476-22492745)
chr2 (308-516)||(42119288-42119505)
chr2 (227-361)||(18387240-18387374)
chr2 (227-516)||(37892797-37893087)
chr2 (420-516)||(17796860-17796956)
chr2 (308-438)||(30760285-30760415)
chr2 (228-307)||(8273245-8273324)
chr2 (231-306)||(11712961-11713036)
chr2 (228-306)||(12967270-12967349)
chr2 (227-319)||(11573632-11573724)
chr2 (262-323)||(42119191-42119252)
chr2 (228-292)||(20685006-20685070)
chr2 (420-481)||(16706190-16706251)
chr2 (228-319)||(939559-939650)
chr2 (420-483)||(32734150-32734213)
chr2 (227-289)||(20686819-20686881)
chr2 (420-482)||(42241877-42241939)
chr2 (225-306)||(18394970-18395051)
chr2 (420-476)||(20147485-20147541)
chr2 (420-476)||(26618130-26618186)
chr2 (256-319)||(24928686-24928749)
chr2 (420-483)||(29905948-29906010)
chr2 (242-300)||(8277394-8277452)
chr2 (228-306)||(22496076-22496154)
chr2 (228-305)||(2154262-2154339)
chr2 (227-275)||(24929364-24929412)
chr2 (228-319)||(25678272-25678363)
chr2 (439-482)||(29110552-29110595)
chr2 (228-292)||(22787999-22788063)
chr2 (227-275)||(25678919-25678967)
chr2 (228-319)||(31133179-31133270)
chr2 (227-287)||(25389869-25389929)
[»] scaffold1763 (2 HSPs)
scaffold1763 (330-516)||(124-310)
scaffold1763 (228-301)||(369-442)
[»] scaffold1063 (1 HSPs)
scaffold1063 (227-321)||(1474-1568)
[»] scaffold0041 (2 HSPs)
scaffold0041 (228-319)||(24352-24443)
scaffold0041 (225-275)||(23484-23534)
[»] scaffold0121 (1 HSPs)
scaffold0121 (420-483)||(4710-4772)
[»] scaffold1455 (1 HSPs)
scaffold1455 (228-287)||(392-451)
[»] scaffold0246 (1 HSPs)
scaffold0246 (228-275)||(2884-2931)
[»] scaffold0163 (1 HSPs)
scaffold0163 (223-295)||(35771-35843)
[»] scaffold0016 (1 HSPs)
scaffold0016 (228-303)||(69722-69797)
[»] scaffold0262 (1 HSPs)
scaffold0262 (228-301)||(8384-8457)
[»] scaffold0037 (1 HSPs)
scaffold0037 (231-288)||(38316-38373)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 95 - 321
Target Start/End: Complemental strand, 6162893 - 6162667
Alignment:
Q  95 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccacttct 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6162893 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccacttct 6162794  T
Q  195 gaaagcttccatacgatccatgtctttcactatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgca 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6162793 gaaagcttccatacgatccatgtctttcactatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgca 6162694  T
Q  295 tgttaacatgcgtagcgtgacttaagt 321  Q
    |||||||||||||||||||||||||||    
T  6162693 tgttaacatgcgtagcgtgacttaagt 6162667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 225 - 516
Target Start/End: Complemental strand, 53827742 - 53827438
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgt 324  Q
    |||||||||||||||||||| |||| ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  53827742 tatgaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgc 53827643  T
Q  325 gct-gt-----gtg-------acttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaat 411  Q
    ||| ||     | |       ||||||||||||||| ||||||||||||| ||||||| ||||| ||  |||||||||||||||||||||||||||| ||    
T  53827642 gctagttataagaggaacacaacttaagtcacgctacgtgctgttattagtccaggcagaacctcatcgtgcatcattttcaaacacaacacacacagat 53827543  T
Q  412 cccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgt 511  Q
    | ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  53827542 ctcaattttctctcaaattatgcaactccaaaattccttcaacttcaaatcaaacaacactaaaacaacaagaacaagtaagctttcacttaaattatgt 53827443  T
Q  512 tggta 516  Q
    |||||    
T  53827442 tggta 53827438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 333 - 516
Target Start/End: Original strand, 47064982 - 47065165
Alignment:
Q  333 acttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatcccaattttctctcaaattac 432  Q
    ||||||||||||||| ||| ||| ||||||||||||| ||||| ||||||| |||||||||||||  ||||||||||||| ||||||||||| ||||||     
T  47064982 acttaagtcacgctacgtgttgtaattagcccaggcagaacctcattctgcctcattttcaaacaacacacacacaaatctcaattttctcttaaattat 47065081  T
Q  433 ccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47065082 ccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 47065165  T

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Target: chr3; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 310 - 516
Target Start/End: Complemental strand, 44836442 - 44836228
Alignment:
Q  310 cgtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaa 409  Q
    |||||||||||||| |||| |||||||||||||||||  ||||||| ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  44836442 cgtgacttaagttgcgctgcgtgacttaagtcacgctgcgtgctgtaattagtccaggcagaacctcattctgcctcattttcaaacacaacacacacaa 44836343  T
Q  410 atcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcc--------aacaacaagaacaagtaagctttcact 501  Q
    |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  44836342 atcttaattttctctcaaattacccaacttcaaaattccttcaacttcaaatcaaacaacactccaacactccaacaacaagaacaagtaagctttcact 44836243  T
Q  502 taaattatgttggta 516  Q
    |||||||||||||||    
T  44836242 taaattatgttggta 44836228  T

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Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 6137735 - 6137615
Alignment:
Q  107 taggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccacttctgaaagcttccat 206  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||    
T  6137735 taggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccagttagcccaagttgtcaaaccagttctaaaagcttccat 6137636  T
Q  207 acgatccatgtctttcactat 227  Q
    |||||||||||||||||||||    
T  6137635 acgatccatgtctttcactat 6137615  T

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Target: chr3; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 13284738 - 13284870
Alignment:
Q  95 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccacttct 194  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13284738 acttgtagtgtacaggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccagttct 13284837  T
Q  195 gaaagcttccatacgatccatgtctttcactat 227  Q
     |||||||||||| | ||||| |||||||||||    
T  13284838 aaaagcttccatatggtccatctctttcactat 13284870  T

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Target: chr3; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 387 - 499
Target Start/End: Complemental strand, 42950922 - 42950808
Alignment:
Q  387 attttcaaacacaacacacaca--aatcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaaga 484  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42950922 attttcaaacacaacacacacacaaatctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaaga 42950823  T
Q  485 acaagtaagctttca 499  Q
    |||||||||||||||    
T  42950822 acaagtaagctttca 42950808  T

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Target: chr3; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 6131944 - 6131812
Alignment:
Q  95 acttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaagttgtcaaaccacttct 194  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||  ||||||||| ||||||||||||||||||||| |||     
T  6131944 acttgtagtgcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctttattaacccagttagcccaagttgtcaaaccagttcg 6131845  T
Q  195 gaaagcttccatacgatccatgtctttcactat 227  Q
     ||||||||||||||||||||||||||||||||    
T  6131844 aaaagcttccatacgatccatgtctttcactat 6131812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 420 - 516
Target Start/End: Complemental strand, 33449986 - 33449893
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  33449986 tctctcaaattacccaactccaaaattccttcaac---aaatcaaacaacactccaataacaagaacaagtaagctttcacttatattatgttggta 33449893  T

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Target: chr3; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 19866733 - 19866824
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||||||||  ||  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  19866733 gaattctgctcattacccaaacagtatcgctcattcccaaagtaaaagtcaaaaatgcccctacgcatgttaacttgcgtagcgtgagttaa 19866824  T

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Target: chr3; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 44836556 - 44836461
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    ||||||||||||||| | ||||||||||||||||| | |||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  44836556 gaattctgctcattatctaaatggttccgctcatttctaaagtaaatgtccatattgcccctacgcatgttaacatgtgtagcgtgacttaagttg 44836461  T

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Target: chr3; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 255 - 347
Target Start/End: Original strand, 42381642 - 42381734
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgctgtgtgacttaagtcacgcta 347  Q
    |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||  |||| |||||||| ||||    
T  42381642 cgctcatttccaaagtaaatgtccaaaatgcccttacgcatgttaacatgcgtagcgtgacttaagttgcgctacgtgatttaagtcatgcta 42381734  T

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Target: chr3; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 42994975 - 42994859
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtg 325  Q
    ||||||||||||||||||| |||| ||  ||||||||||||||||||| ||| ||||||||| |  |||||||||||||| ||||||||||||||||| |    
T  42994975 atgaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtctaaaatgcccatgggcatgttaacatgcatagcgtgacttaagttgcg 42994876  T
Q  326 ctgtgtgacttaagtca 342  Q
     |  |||||||||||||    
T  42994875 atacgtgacttaagtca 42994859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 44833470 - 44833546
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatg 304  Q
    ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||||    
T  44833470 gaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaacatg 44833546  T

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Target: chr3; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 47064863 - 47064947
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcg 311  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||||||    
T  47064863 tgaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaacttacgtagcg 47064947  T

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Target: chr3; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 15042084 - 15041993
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||||||||   |  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  15042084 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgtagcgtgagttaa 15041993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 455 - 516
Target Start/End: Complemental strand, 42950811 - 42950750
Alignment:
Q  455 ttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42950811 ttcaaatcaaacaacactccaacaacaagaacaagtaagctttcccttaaattatgttggta 42950750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 4969875 - 4969939
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacg 4969939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 11342887 - 11342962
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaa 300  Q
    |||||||||||||||||   |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  11342887 tatgaattctgctcattgttcaaatggttccgttcattcccaaagtaaaagtccaaaaagcccctacgcatgttaa 11342962  T

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Target: chr3; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 42951066 - 42950971
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    |||||||||||||||| |||||  |||||||||||||||||||||| ||||| | ||||| |||| ||||||||||| ||||||||| ||||||||    
T  42951066 gaattctgctcattactcaaatacttccgctcattcccaaagtaaatgtccatattgcccatacgtatgttaacatgtgtagcgtgatttaagttg 42950971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 35995137 - 35995231
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagtt 322  Q
    ||||||| ||||||||||||||||||| |||| ||| ||||||||||||  ||||||||||| |||||||||||||||||  ||||| |||||||    
T  35995137 gaattctactcattacccaaatggttctgctccttcgcaaagtaaaagtttaaaatgccccttcgcatgttaacatgcgtcacgtgagttaagtt 35995231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 42947375 - 42947453
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||| ||||| || | ||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  42947375 gaattctgctcattacctaaatgatttcactcattctcaaagtaaaagtccaaaatgctcctacgcatgttaacatgcg 42947453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 53814639 - 53814561
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaatatgcg 53814561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 15040681 - 15040758
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| | |  ||||||||||||||||||||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgc 15040758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 34086891 - 34086827
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  34086891 cgctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgtagcgtgagttaa 34086827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 7667040 - 7666949
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||| |||||||||||||||  ||  |||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||||| ||||    
T  7667040 gaattttgctcattacccaaacagtatcgctcattcccaaaataaaagtcaaaaatgcccctacgcatgttaacttgcatagcgtgagttaa 7666949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 11343876 - 11343784
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccc-tacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||  |||||||||||||||| || ||||||||||||| |||||||||| |||||||||||||    ||||||||||||||    
T  11343876 gaattctgctcattattcaaatggttccgctcactctcaaagtaaaagtcaaaaatgccccatacgcatgttaactcaggtagcgtgacttaa 11343784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 37280828 - 37280891
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  37280828 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 37280891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 50663875 - 50663966
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||| | ||||||||| || |||||||||||||||||||   |||||||||||||||||||||||||   |||||||||| ||||    
T  50663875 gaattctgctcttcacccaaatgatttcgctcattcccaaagtaaataaccaaaatgcccctacgcatgttaactcacgtagcgtgagttaa 50663966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 53561262 - 53561325
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  53561262 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 53561325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 455 - 499
Target Start/End: Original strand, 42381740 - 42381784
Alignment:
Q  455 ttcaaatcaaacaacactccaacaacaagaacaagtaagctttca 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42381740 ttcaaatcaaacaacactccaacaacaagaacaagtaagctttca 42381784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 7953577 - 7953640
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||| ||||| |||||||||||||||||||||| ||||||    
T  7953577 tctctcaaatcacccaaatccaaaattcgttcaagttcaaatcaaacaacactccaataacaag 7953640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 228 - 343
Target Start/End: Original strand, 16931446 - 16931561
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct 327  Q
    |||||||||||||||  ||||| ||  ||||| |||| |||||||| |||||| ||  | || |||||||||||||||||| ||||| |||||||| |||    
T  16931446 gaattctgctcattattcaaatagtatcgctcgttcctaaagtaaatgtccaatatatctctgcgcatgttaacatgcgtaccgtgatttaagttgcgct 16931545  T
Q  328 gtgtgacttaagtcac 343  Q
      ||||||||||||||    
T  16931546 acgtgacttaagtcac 16931561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 2325639 - 2325561
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||| |||||| | |||||||| ||  ||||||||||||||||||  |||||| |||||||||||||||||||||    
T  2325639 gaattctggtcattatctaaatggtttcgtccattcccaaagtaaaagtttaaaatgtccctacgcatgttaacatgcg 2325561  T

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Target: chr3; HSP #35
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 13843670 - 13843624
Alignment:
Q  229 aattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaaag 13843624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 19234558 - 19234615
Alignment:
Q  418 tttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcca 475  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||    
T  19234558 tttctctcaaattacccaaatccaaaattctttcaagttcaaatcaaaccacactcca 19234615  T

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Target: chr3; HSP #37
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 25577427 - 25577371
Alignment:
Q  426 aaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaa 482  Q
    |||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  25577427 aaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaa 25577371  T

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Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 19872222 - 19872140
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 307  Q
    |||||||||||| ||||||| |||||  | |||||||||| ||| |||| | | |||||||| ||||||||||||||||||||    
T  19872222 tatgaattctgcccattacctaaatgaattcgctcattcctaaaataaatgactaaaatgcctctacgcatgttaacatgcgt 19872140  T

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Target: chr3; HSP #39
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 40517604 - 40517534
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcat 295  Q
    |||||||||||||| ||||||||| |||| |||||||||| |||||||| | |||| || |||||||||||    
T  40517604 tatgaattctgctctttacccaaacggtttcgctcattcctaaagtaaatgaccaagatacccctacgcat 40517534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 7665739 - 7665811
Alignment:
Q  234 tgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||| ||||||||| | ||||||||| ||||||||| | || |||||||| || |||||||||||||||    
T  7665739 tgctcatttcccaaatggattcgctcattcgcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcg 7665811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 34082845 - 34082917
Alignment:
Q  234 tgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||| ||||||||  | |||||||| |||||||||| |  |||||||| ||||||||||||||||||||    
T  34082845 tgctcattgcccaaatgaattcgctcatttccaaagtaaatgatcaaaatgctcctacgcatgttaacatgcg 34082917  T

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Target: chr3; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 43687604 - 43687660
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaa 476  Q
    |||||||||| | |||| | |||||||||||||| ||||||||||||||||||||||    
T  43687604 tctctcaaatcaaccaaattcaaaattccttcaagttcaaatcaaacaacactccaa 43687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 14264919 - 14264974
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcca 475  Q
    |||||||||| |||||| || ||||||||||||| |||||||| ||||||||||||    
T  14264919 tctctcaaatcacccaaatcaaaaattccttcaagttcaaatctaacaacactcca 14264974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 483
Target Start/End: Complemental strand, 36722198 - 36722139
Alignment:
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||| |||||| |||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  36722198 tcaaatcacccaaatccaaaattcattcaagttcgaatcaaacaacactccaataacaag 36722139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 39688802 - 39688739
Alignment:
Q  256 gctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||| ||||||||||||| ||||| ||||||| ||||||||| | |||||||||| ||||    
T  39688802 gctcattctcaaagtaaaagtcgaaaatacccctacacatgttaactttcgtagcgtgagttaa 39688739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 44430418 - 44430465
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaaag 44430465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 48088399 - 48088336
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| || ||| | |||||||||||||| ||||||| |||||||||||||| ||||||    
T  48088399 tctctcaaatcactcaaattcaaaattccttcaagttcaaattaaacaacactccaataacaag 48088336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 42993567 - 42993644
Alignment:
Q  229 aattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||| |||| |||  ||  |||||||||||||||||||  ||| |||||||||| || |||||||||||||    
T  42993567 aattctgctcactacctaaagagtatcgctcattcccaaagtaaatttcctaaatgcccctgcgtatgttaacatgcg 42993644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 54529034 - 54528961
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||| ||||| ||||| ||  |||||||| ||| ||||| ||||||||| ||||||| |||||||||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaac 54528961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 483
Target Start/End: Complemental strand, 6465157 - 6465118
Alignment:
Q  444 attccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  6465157 attccttcaagttcaaatcaaacaacactccaataacaag 6465118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 35485242 - 35485321
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||| |||||  ||  |||||||||  |||||||| ||  ||||||||||| | ||||||||||||||    
T  35485242 tgaattctgctcattatccaaacagtatcgctcattcttaaagtaaatgtttaaaatgcccctgcacatgttaacatgcg 35485321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 483
Target Start/End: Complemental strand, 39417796 - 39417738
Alignment:
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||| |||||| | ||||||||||| || |||||||||||||||||||||| ||||||    
T  39417796 tcaaatcacccaaattcaaaattcctt-aagttcaaatcaaacaacactccaataacaag 39417738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 39685212 - 39685259
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    ||||| |||||||||||||||||||| ||||||||  |||||||||||    
T  39685212 gaattttgctcattacccaaatggtttcgctcattttcaaagtaaaag 39685259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 39649956 - 39649867
Alignment:
Q  232 tctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagt 321  Q
    ||||||||||||| ||||||||||| | |||| ||||||||| |  | |||||  | |||||| |||||||||||   ||||||||||||    
T  39649956 tctgctcattacctaaatggttccgtttattctcaaagtaaatgatcgaaatgttcatacgcaagttaacatgcgctacgtgacttaagt 39649867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 3860889 - 3860826
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||| ||||||||||||  |||| |||| |||| |||||||| |||||||||||| ||||    
T  3860889 cgctcattctcaaagtaaaagttgaaaacgccc-tacgtatgttaacttgcgtagcgtgagttaa 3860826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 8634240 - 8634188
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacact 472  Q
    |||||||||| ||||||  |||||| | |||||| ||||||||||||||||||    
T  8634240 tctctcaaatcacccaaacccaaaaattcttcaagttcaaatcaaacaacact 8634188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 35106039 - 35106003
Alignment:
Q  248 atggttccgctcattcccaaagtaaaagtccaaaatg 284  Q
    |||||||||||||||||||||||||| | ||||||||    
T  35106039 atggttccgctcattcccaaagtaaatgaccaaaatg 35106003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 39645772 - 39645852
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||| |||||||| | |||||| | || |||||| ||||||||| |  | |||||  ||||||||||||||||||||    
T  39645772 atgaattccgctcattatctaaatggattcgttcattcgcaaagtaaatgatcgaaatgttcctacgcatgttaacatgcg 39645852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 227 - 516
Target Start/End: Complemental strand, 33164584 - 33164280
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgc 326  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33164584 tgaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgc 33164485  T
Q  327 t-gt------------gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacaca--aat 411  Q
    | ||            || ||||||||||| |||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  |||    
T  33164484 tagttataagagaaacgtaacttaagtcacactacatgctgttattagcccaggcagaacctcattctgcatcattttcaaacacaacacacacacaaat 33164385  T
Q  412 cccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgt 511  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33164384 ctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacgtaaattatgt 33164285  T
Q  512 tggta 516  Q
    |||||    
T  33164284 tggta 33164280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 325 - 516
Target Start/End: Complemental strand, 46817432 - 46817239
Alignment:
Q  325 gctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacaca--aatcccaattttct 422  Q
    |||| ||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||||||||     
T  46817432 gctgcgtgacttaagtcacgctacatgctgttattagtccaggcaaaacctcattctgcatcattttcaaacacaacacacacacaaatctcaattttca 46817333  T
Q  423 ctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    || |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46817332 ctaaaattatccaacttcaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 46817239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 228 - 483
Target Start/End: Original strand, 36172165 - 36172402
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct 327  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||| | |||||||||||||||||    
T  36172165 gaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaacatgcgtggtgtgacttaagttgtgct 36172264  T
Q  328 gtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatcccaattttctctcaa 427  Q
      |||||||||||||||||| ||||||| |||    |||| | ||||          |||||||||||||    ||||||||||| || |||||||| ||    
T  36172265 acgtgacttaagtcacgctacgtgctgtaatt----cagggagaacc----------tcattttcaaaca----acacacaaatctcatttttctcttaa 36172346  T
Q  428 attacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  36172347 attacccaactccaaaattcctataacttcaaatcaaacaacactccaacaacaag 36172402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 228 - 455
Target Start/End: Original strand, 36217870 - 36218110
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct 327  Q
    ||||||||||| |||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||  ||  ||    
T  36217870 gaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacttacgtagcgtgagttaacatgcact 36217969  T
Q  328 -gt------------gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatccc 414  Q
     ||            |||||||||||||||||| ||||||| |||||||||| || ||||| ||||||| |||||||||||||||||||||||||||| |    
T  36217970 agttataagagaaacgtgacttaagtcacgctacgtgctgtgattagcccagacagaacctcattctgcctcattttcaaacacaacacacacaaatctc 36218069  T
Q  415 aattttctctcaaattacccaactccaaaattccttcaact 455  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  36218070 aattttctctcaaaataccaaactccaaaattccatcaact 36218110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 312 - 504
Target Start/End: Original strand, 55312204 - 55312404
Alignment:
Q  312 tgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacac-------- 403  Q
    |||||||||||| |||  ||||||| |||||| ||| ||||||||||||||| || || ||||| ||  || || |||||||||||||||||            
T  55312204 tgacttaagttgcgctacgtgacttgagtcacactacgtgctgttattagccgagacagaacctcatcatgtattattttcaaacacaacacacacacac 55312303  T
Q  404 acacaaatcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcactta 503  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  55312304 acacaaatctcaattttctctcaaattacccaactccaaaattccttcaatttcaaatcaaacaatactccaacaaaaagaacaaataagctttcactta 55312403  T
Q  504 a 504  Q
    |    
T  55312404 a 55312404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 51718172 - 51718268
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagtt 322  Q
    ||||||| || |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||| ||  |||||||| |||||||||||||||||    
T  51718172 atgaattatgttcattacccagatggttctgctcattcccaaagtaaaagtcgaaaatgcccctacacaacttaacatgtgtagcgtgacttaagtt 51718268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 34235783 - 34235691
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| | || |||||||| ||||||||||||||||| | | |||||||||    
T  34235783 tgaattatgctcattacccaaatggttccgctcattcctaaagtaaatgaccgaaatgcccatacgcatgttaacatgcattgtgtgacttaa 34235691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 28798223 - 28798128
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    |||||||||||||||||||||  ||  ||||||||| ||||||||| ||||||||||||||| | |||||||||||| |||| |||||||||||||    
T  28798223 gaattctgctcattacccaaacagtatcgctcattctcaaagtaaatgtccaaaatgcccctgcacatgttaacatgtgtagtgtgacttaagttg 28798128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 40450931 - 40451022
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||||| |||  ||  ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||| ||||    
T  40450931 gaattctgctcattacctaaacagtatcgctcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgtgtagcttgagttaa 40451022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 53267879 - 53267784
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    ||||||||| || || |||||||||||| |||||| |||||||||| || || | || |||||||||||||||||| |||||||||||||||||||    
T  53267879 gaattctgcacaatatccaaatggttccactcatttccaaagtaaatgttcatattgtccctacgcatgttaacatacgtagcgtgacttaagttg 53267784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 36174649 - 36174579
Alignment:
Q  236 ctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||| ||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  36174649 ctcattactcaaatggtttcactcattcccaaagtaaaaatccaaaatgccactacgcatgttaacatgcg 36174579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 24972389 - 24972481
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||||| |||  ||  |||||||||| |||||||||||| ||||  ||||||||||||||||| |||||||||||| ||||    
T  24972389 tgaattctgctcattacctaaacagtatcgctcattcctaaagtaaaagtcaaaaacacccctacgcatgttaacttgcgtagcgtgagttaa 24972481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 42099577 - 42099509
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    |||||||| |||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  42099577 cgctcatttccaaagtaaatgtccaaaatacacctgcgcatgttaacatgcgtagcgtgacttaagttg 42099509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 17210647 - 17210710
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||    
T  17210647 tctctcaaattacccaaatccaaaatttcttcaagttcaaatcaaacaacactccaataacaag 17210710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 24974221 - 24974146
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||| |||||||| |  |||||||||||||||||| | || |||||||||||||||||||||||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcg 24974146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 36498906 - 36498997
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||| ||||  ||  ||||||||||||||||||||||  |||||||||||| |||||||||| ||| |||||||| ||||    
T  36498906 gaattctgctcattactcaaacagtatcgctcattcccaaagtaaaagttgaaaatgcccctatgcatgttaacttgcatagcgtgagttaa 36498997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 12586182 - 12586276
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtc-caaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||||||| |||   | ||||||||||||||||||||||||  |||||||||||| |||||||||| ||| |||||||| ||||    
T  12586182 atgaattctgctcattacctaaacaataccgctcattcccaaagtaaaagtcgaaaaatgcccctatgcatgttaacttgcatagcgtgagttaa 12586276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 53265809 - 53265870
Alignment:
Q  245 caaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  53265809 caaatggtttcgctcattcctaaagtaaaattccaaaatgctcctacgcatgttaacatgcg 53265870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 40312874 - 40312794
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| | | |||| |||||||||||||    
T  40312874 atgatttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcg 40312794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 40322950 - 40322870
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| | | |||| |||||||||||||    
T  40322950 atgatttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgtatgttaacatgcg 40322870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 21710918 - 21710981
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| | |||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  21710918 tctctcaaatcatccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 21710981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 23125380 - 23125317
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| | |||||||||||||||||||||||||||||||||| || ||||||    
T  23125380 tctctcaaatcacccaaattcaaaattccttcaacttcaaatcaaacaacactctaataacaag 23125317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 27759012 - 27759075
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| | |||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  27759012 tctctcaaatcatccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 27759075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 424 - 483
Target Start/End: Complemental strand, 31825698 - 31825639
Alignment:
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  31825698 tcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 31825639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 36501940 - 36501865
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||| |||| | ||||||||||||||||||| |  | ||||||||||||||||||| |||||||    
T  36501940 ttctgctcattacccagatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttgacatgcg 36501865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 628085 - 628135
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  628085 tatgaattctgctcattacccaaatggtttcgctcattcctaaagtaaaag 628135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 46817513 - 46817432
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||||  ||  ||  |||||||||  |||||||| || |||||||||||||||||||||||||||||    
T  46817513 tatgaattctgctcattacctgaacagtatcgctcattcttaaagtaaatgttcaaaatgcccctacgcatgttaacatgcg 46817432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 402
Target Start/End: Complemental strand, 12572763 - 12572691
Alignment:
Q  330 gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaaca 402  Q
    ||||||||||||| ||||  |||| ||||||||||||||| ||||| ||  ||||||||||||||||||||||    
T  12572763 gtgacttaagtcatgctacatgctattattagcccaggcagaacctcatcatgcatcattttcaaacacaaca 12572691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 323
Target Start/End: Complemental strand, 12572898 - 12572802
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    |||||||||||||| | |||||  ||  || |||||| ||||||||| ||||||||||||||| |||||||||| |||| || ||||||||| ||||    
T  12572898 tgaattctgctcatcatccaaacagtatcgttcattctcaaagtaaatgtccaaaatgcccctgcgcatgttaatatgcatatcgtgacttatgttg 12572802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 474
Target Start/End: Original strand, 13850246 - 13850300
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcc 474  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||    
T  13850246 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacatcactcc 13850300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 475
Target Start/End: Original strand, 18411969 - 18412026
Alignment:
Q  418 tttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcca 475  Q
    ||||||||||||||||||| | ||||||| |||||| |||||||||||| ||||||||    
T  18411969 tttctctcaaattacccaaattcaaaatttcttcaagttcaaatcaaaccacactcca 18412026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 483
Target Start/End: Original strand, 49063349 - 49063406
Alignment:
Q  426 aaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||| |||||| |||||||||||||||| |||||||||||||||| ||||| ||||||    
T  49063349 aaatcacccaaatccaaaattccttcaagttcaaatcaaacaacattccaataacaag 49063406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 55523725 - 55523798
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||||||| |||||   |  ||||||||  ||||||||||||| |||||||||||||||||||||||    
T  55523725 gaattctgctcattatccaaacattatcgctcattttcaaagtaaaagtcgaaaatgcccctacgcatgttaac 55523798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 31323705 - 31323749
Alignment:
Q  431 acccaactccaaaattccttcaacttcaaatcaaacaacactcca 475  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  31323705 acccaaatccaaaattccttcaaattcaaatcaaacaacactcca 31323749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 636662 - 636571
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||| |||||||||||||||  ||  |||| ||| ||||||||||| |  ||||||||| | ||||||||||| |||||||||||| ||||    
T  636662 gaattatgctcattacccaaacagtatcgcttatttccaaagtaaaaattgaaaatgcccatgcgcatgttaacttgcgtagcgtgagttaa 636571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 42420531 - 42420593
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||| ||||||||| |||||||||||||||| ||||| ||||||    
T  42420531 tctctcaaatcacccaaatccaaa-ttccttcaagttcaaatcaaacaacattccaataacaag 42420593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 55527992 - 55527917
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaaca 302  Q
    ||||||||||||||||   |||||| | |||||||| |||||| ||| | || |||||||||||||||||||||||    
T  55527992 tgaattctgctcattatttaaatggattcgctcatttccaaagcaaatgaccgaaatgcccctacgcatgttaaca 55527917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 12586875 - 12586798
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||| ||||||||| ||||||| | |||||||| ||||| |||| | || ||||| |||||||||||||||||||||    
T  12586875 gaattcagctcattactcaaatggattcgctcatttccaaa-taaatgaccgaaatgtccctacgcatgttaacatgcg 12586798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 483
Target Start/End: Complemental strand, 31825435 - 31825393
Alignment:
Q  441 aaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  31825435 aaaattccttcaagttcaaatcaaacaacactccaataacaag 31825393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 45247059 - 45246981
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||| |||||||||  |||||||||||| ||||| | |||||||| |  ||||||| ||||||| |||||||||||||    
T  45247059 gaattatgctcattattcaaatggttccgttcatttctaaagtaaatgatcaaaatgtccctacgtatgttaacatgcg 45246981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 23283211 - 23283292
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||| ||||  ||||| ||| |||| ||| |||||||||| | || ||||||||||| ||| |||||||||||    
T  23283211 tatgaattctgctgattattcaaatagtttcgcttatttccaaagtaaatgaccgaaatgcccctatgcaagttaacatgcg 23283292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 24606132 - 24606177
Alignment:
Q  438 tccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||    
T  24606132 tccaaaattccttcaagttcaaatcaaacaacactctaataacaag 24606177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 32938713 - 32938652
Alignment:
Q  415 aattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaa 476  Q
    |||| ||||||| || | |||| ||||||| |||||||| ||||||||||||||||||||||    
T  32938713 aattctctctcatatcatccaaatccaaaaatccttcaagttcaaatcaaacaacactccaa 32938652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 38676939 - 38677012
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||| ||| ||| ||||| ||||  ||||||||||||| |||| ||||||||| || ||||||||||||||    
T  38676939 gaattctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaatacctctacgcatgttaac 38677012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 40923406 - 40923467
Alignment:
Q  258 tcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||| |||||||||||||  |||||||||||||| |||||||| ||||||| |||| ||||    
T  40923406 tcatttccaaagtaaaagtaaaaaatgcccctacgtatgttaacttgcgtagagtgagttaa 40923467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 40923966 - 40923925
Alignment:
Q  234 tgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  40923966 tgctcattacccaaatggtttcgctcattcctaaagtaaaag 40923925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 27992116 - 27992188
Alignment:
Q  229 aattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    |||| |||||||||  ||||||| |  |||||||||||||||||| | || ||||||||||| ||||||||||    
T  27992116 aattatgctcattattcaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctaagcatgttaac 27992188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 45237409 - 45237489
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||||| ||||||| | |||| ||| | ||||||||   |  ||||||||||| |||||||||||||||    
T  45237409 atgaattctgctcattactcaaatggattcgcttatttctaaagtaaataactgaaatgcccctatgcatgttaacatgcg 45237489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 13865773 - 13865828
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcca 475  Q
    ||||| |||| |||||| |||||||||||||||| || |||||||||| |||||||    
T  13865773 tctcttaaatcacccaaatccaaaattccttcaagttaaaatcaaacatcactcca 13865828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 14331547 - 14331484
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| || ||| || ||||||||||||  | |||||||||||||||||||| ||||||    
T  14331547 tctctcaaatcactcaaatctaaaattccttcaggtccaaatcaaacaacactccaataacaag 14331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 51719852 - 51719773
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 307  Q
    |||||||||| ||||||||||||| | |||| ||| ||||||||||   || |||| |||||||| | ||||||||||||    
T  51719852 gaattctgcttattacccaaatggattcgcttatttccaaagtaaataaccgaaatacccctacgtaagttaacatgcgt 51719773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 302
Target Start/End: Original strand, 28796620 - 28796694
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaaca 302  Q
    |||||||||||||||||||||   |  ||||||||| ||||||||| |||||||||| || |  |||||||||||    
T  28796620 gaattctgctcattacccaaacaatatcgctcattctcaaagtaaatgtccaaaatgtccatgtgcatgttaaca 28796694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 314
Target Start/End: Complemental strand, 38677740 - 38677654
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtga 314  Q
    ||||||||||| ||||||||| | ||  | ||||||||||||||||  | ||||||  |||| ||||||||||| | ||||||||||    
T  38677740 gaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaacttacgtagcgtga 38677654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 27992382 - 27992309
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||| || ||||||||||||||| |  ||||||| | ||| |||| ||||||||| |||||| ||||||||||    
T  27992382 gaattatgttcattacccaaatggatttgctcatttctaaaataaatgtccaaaatacccctatgcatgttaac 27992309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 37577320 - 37577271
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    ||||||||||||||||| ||||||  || |||||||||| ||||||||||    
T  37577320 atgaattctgctcattatccaaataatttcgctcattcctaaagtaaaag 37577271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 54208180 - 54208253
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||| ||||| ||| ||||||||||  |||||||||||||||||| |  |||||| ||||||| || ||||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaac 54208253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 28798105 - 28798073
Alignment:
Q  333 acttaagtcacgctatgtgctgttattagccca 365  Q
    ||||||||||||||| |||||||||||||||||    
T  28798105 acttaagtcacgctacgtgctgttattagccca 28798073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 37576543 - 37576607
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacg 292  Q
    ||||||||||||||||||||| ||||  |||| || |||||||||| ||||| | | ||||||||    
T  37576543 gaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtccatattacccctacg 37576607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 47044067 - 47043991
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatg 304  Q
    ||||| |||||||||| ||||  ||  || ||||||| ||||||||  | |||||||||||| ||||||||||||||    
T  47044067 gaattttgctcattactcaaactgtatcgttcattcctaaagtaaatattcaaaatgcccctgcgcatgttaacatg 47043991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 4e-98; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 224 - 516
Target Start/End: Original strand, 40008708 - 40009013
Alignment:
Q  224 ctatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    ||||||||||||||||||||| |||   |  ||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  40008708 ctatgaattctgctcattacctaaacattatcgctcattctcaaagtaaatgtctaaaatgcccctgcgcatgttaacatgcgtagcgtgacttaagttg 40008807  T
Q  324 tgctgt-------------gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaa 410  Q
     ||||              || |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40008808 cgctggttataaaaggaacgtaacttaagtcacgctacttgctgttattagcccaggcaaaacctcattctgcatcattttcaaacacaacacacacaaa 40008907  T
Q  411 tcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatg 510  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  40008908 tctcaattttctctcaaattatccaactccaaaattccttcaacttcaaatcatacgacactccaacaacaagaacaagtaagctttcacttaaattatg 40009007  T
Q  511 ttggta 516  Q
    ||||||    
T  40009008 ttggta 40009013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 227 - 516
Target Start/End: Original strand, 3458013 - 3458285
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgc 326  Q
    |||||||||||||||||| |||  ||   ||||||| |||||||||| ||||||||| ||| | | |||||||||||||||||||||||||||||||       
T  3458013 tgaattctgctcattaccgaaaccgtattgctcatttccaaagtaaatgtccaaaatacccatgcacatgttaacatgcgtagcgtgacttaagttg--- 3458109  T
Q  327 tgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacac--acacaaatcccaattttctct 424  Q
                    |||||||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||  ||||||||| |||||||||||    
T  3458110 ----------------cgctatgtcctgttattagcccaggcagaacctcattatgcatcactttcaaacacaacacacacacaaatctcaattttctct 3458193  T
Q  425 caaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  3458194 caaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaaaaacaagtaagctatcacttaaattatgttggta 3458285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 308 - 516
Target Start/End: Original strand, 19399616 - 19399826
Alignment:
Q  308 agcgtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacac 407  Q
    |||||||||||||||  |||  ||||||||||| |||||| ||| ||| ||||||| ||  | ||| | ||||||| |||||||||||||  ||||||||    
T  19399616 agcgtgacttaagttccgctacgtgacttaagttacgctacgtgatgtaattagcctagagagaacttgattctgcctcattttcaaacaacacacacac 19399715  T
Q  408 aaatcccaattttctctcaaattacccaactccaaaattccttcaactt--caaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaa 505  Q
    ||||| || |||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  19399716 aaatctcatttttctctcaaattacccaactccaaaattcctttaacttcacaaatcaaacaacacttcaacaacaagaacaagtaagttttcacttaaa 19399815  T
Q  506 ttatgttggta 516  Q
    |||||||||||    
T  19399816 ttatgttggta 19399826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 6702369 - 6702461
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||||    
T  6702369 tgaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacgcatgttaacttgcgtagcgtgagttaa 6702461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 19402079 - 19401999
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||| | |||||||||||||||||| | ||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  19402079 atgaattattctcattacccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccatacgcatgttaacatgcg 19401999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 232 - 319
Target Start/End: Complemental strand, 30491869 - 30491782
Alignment:
Q  232 tctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||| ||||    
T  30491869 tctgctcattacccaaatgaattcgctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaacttgcgtagtgtgagttaa 30491782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 1975352 - 1975285
Alignment:
Q  256 gctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    ||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  1975352 gctcatttccaaagtaaatgtccaaaatgcccatgcgcatgttaacatgcgtagcgtgacttaagttg 1975285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 17644681 - 17644606
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaa 300  Q
    |||||||| ||||||||||| |||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  17644681 tatgaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaa 17644606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 5504735 - 5504827
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||| |||||||||||||   |  |||||||||| |||||||||||| |||||||| |||||||||||||| |||||||||||| ||||    
T  5504735 tgaattctactcattacccaaacactatcgctcattcctaaagtaaaagtcgaaaatgcctctacgcatgttaacttgcgtagcgtgagttaa 5504827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 19399501 - 19399585
Alignment:
Q  239 attacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    |||||| |||||||||| |||||||| ||||||||||| |||||||  | ||| |||||||||||| ||||||||||||||||||    
T  19399501 attacctaaatggttccactcattcctaaagtaaaagttcaaaatgtacatacacatgttaacatgtgtagcgtgacttaagttg 19399585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 4845302 - 4845392
Alignment:
Q  229 aattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||  ||||| ||  |||||||||| |||||||| ||| ||||||| ||| |||||||||||||| ||||||||||||||    
T  4845302 aattctgctcattattcaaatagtatcgctcattcctaaagtaaatgtctaaaatgctcctgcgcatgttaacatgtgtagcgtgacttaa 4845392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 321
Target Start/End: Complemental strand, 34017698 - 34017604
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagt 321  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||| | || |||| |||||||||| || ||||||||   ||||||||||||    
T  34017698 tgaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaatacccctacgcaagtaaacatgcgctacgtgacttaagt 34017604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 34016002 - 34016079
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    ||||||||||||||||| |||||| | ||||||||||||||||||| | |  |||||||||||| |||||||||||||    
T  34016002 gaattctgctcattacctaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacacatgttaacatgc 34016079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 1974155 - 1974234
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||| ||||||||||||| || ||  ||||||||||||||||||| ||||||||||| | | ||||||||||||||||    
T  1974155 tgaattatgctcattacccagatagtatcgctcattcccaaagtaaatgtccaaaatgctcttgcgcatgttaacatgcg 1974234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 7081654 - 7081717
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| | |||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  7081654 tctctcaaatcatccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 7081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 15798800 - 15798737
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||| || ||||||||||||||||||| ||||||    
T  15798800 tctctcaaatcacccaaatccaaaattccttcaagtttaaatcaaacaacactccaataacaag 15798737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 30489753 - 30489800
Alignment:
Q  258 tcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  30489753 tcattcccaaagtaaaagtcgaaaatgcccctacgcatgttaacatgc 30489800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 1145141 - 1145214
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||| ||||||||| |||||  ||| ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  1145141 gaattatgctcattatccaaacagtttcgctcattcccaaagtaaatgaccaaaatgcctctacgcatgttaac 1145214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 481
Target Start/End: Original strand, 33370005 - 33370066
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaaca 481  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||| ||| ||||    
T  33370005 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacacttcaataaca 33370066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 38739387 - 38739480
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagt 321  Q
    ||||| ||||| |||||||||| ||| ||||||||  ||||||||| |||  ||||||||||||||| |||| |||||||  ||||||||||||    
T  38739387 gaattatgctctttacccaaatcgtttcgctcattgtcaaagtaaatgtcacaaatgcccctacgcaagttagcatgcgttacgtgacttaagt 38739480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 759160 - 759236
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatg 304  Q
    ||||||||||||||||| |||||| | || |||||||||||||||| | || |||||| | ||||||||||||||||    
T  759160 gaattctgctcattacctaaatggattcgatcattcccaaagtaaatgaccgaaatgctcatacgcatgttaacatg 759236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 6706107 - 6706035
Alignment:
Q  234 tgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||| |||||||| | |||||||| |||||||||| | |  |||||||||||||||||||||||||||    
T  6706107 tgctcattatccaaatggattcgctcatttccaaagtaaatgactgaaatgcccctacgcatgttaacatgcg 6706035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 4113936 - 4113873
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||| | |||||| || ||||||||||||| |||||||||||||||||||||| ||||||    
T  4113936 tctctcaagtcacccaaatctaaaattccttcaagttcaaatcaaacaacactccaataacaag 4113873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 33144262 - 33144171
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||| ||||||||||||   |  |||||||||| |||||||| | || |||||||||||||||||||||| ||||||| |||| ||||    
T  33144262 gaattctgttcattacccaaacaatatcgctcattcctaaagtaaatgaccgaaatgcccctacgcatgttaacttgcgtagggtgagttaa 33144171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 10975313 - 10975378
Alignment:
Q  418 tttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||||| | |||| |||||||||||||||| ||||||||| |||| ||||||| ||||||    
T  10975313 tttctctcaaatcaaccaaatccaaaattccttcaagttcaaatcacacaatactccaataacaag 10975378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 11135741 - 11135814
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||| ||||| ||||||||||| || |||||||| ||||| |||| | ||||||| |||||||||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaac 11135814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 36580219 - 36580296
Alignment:
Q  224 ctatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||||||||||||  ||||||||||||| ||| | ||| ||||||| ||||||  |||||| |||||||||    
T  36580219 ctatgaattctgctcattacttaaatggttccgcttatttctaaaataaaagttcaaaatatccctacacatgttaac 36580296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 424 - 475
Target Start/End: Original strand, 2598719 - 2598770
Alignment:
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcca 475  Q
    |||||| |||||| ||||||||||||| || |||||||||||||||||||||    
T  2598719 tcaaatcacccaaatccaaaattccttaaagttcaaatcaaacaacactcca 2598770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 483
Target Start/End: Complemental strand, 36317736 - 36317693
Alignment:
Q  440 caaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||| |||||||||||||||||||||||||||||||| ||||||    
T  36317736 caaatttccttcaacttcaaatcaaacaacactccaataacaag 36317693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 6159021 - 6158948
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    |||||||||||||||||  |||||| | ||||||||||||||||||| ||| |||||  ||||||| ||||||||    
T  6159021 tgaattctgctcattacttaaatggattcgctcattcccaaagtaaatgtctaaaat-accctacgtatgttaac 6158948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 493
Target Start/End: Complemental strand, 17367785 - 17367731
Alignment:
Q  439 ccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaag 493  Q
    ||||||| ||||||||||||||||| |||||||||| | || |||||||||||||    
T  17367785 ccaaaatgccttcaacttcaaatcagacaacactcccataagaagaacaagtaag 17367731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 28677886 - 28677964
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||| ||||||||   |||||||||| |||||||| | || |||| |||||||| | |||||||||||    
T  28677886 gaattctgctcattatccaaatggaatcgctcattcctaaagtaaatgaccgaaatacccctacgtaagttaacatgcg 28677964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 763372 - 763327
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaa 273  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||    
T  763372 gaattatgctcattactcaaatggttccgctcattcccaaaataaa 763327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 12742113 - 12742165
Alignment:
Q  421 ctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactc 473  Q
    ||||||||| ||| || | |||||||||||||| |||||||||||||||||||    
T  12742113 ctctcaaatcacctaaattcaaaattccttcaagttcaaatcaaacaacactc 12742165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 12804928 - 12804980
Alignment:
Q  421 ctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactc 473  Q
    ||||||||| ||| || | |||||||||||||| |||||||||||||||||||    
T  12804928 ctctcaaatcacctaaattcaaaattccttcaaattcaaatcaaacaacactc 12804980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 33037430 - 33037386
Alignment:
Q  257 ctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||||||||| | ||||||||||||||| |||||||||    
T  33037430 ctcattcccaaagtaaatgaccaaaatgcccctacacatgttaac 33037386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 483
Target Start/End: Complemental strand, 22858411 - 22858368
Alignment:
Q  440 caaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||||||| ||||||||||||||||||| || ||||||    
T  22858411 caaaattccttcaaattcaaatcaaacaacactctaataacaag 22858368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 23229450 - 23229387
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||| |||| |||||| | ||||||| |||||| ||||||||||||||||||| || ||||||    
T  23229450 tctcttaaatcacccaaattcaaaattacttcaagttcaaatcaaacaacactctaaaaacaag 23229387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 25361301 - 25361238
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| | | || ||| |||||||||||| |||||||| ||||||||||||| ||||||    
T  25361301 tctctcaaatcatcaaaatcctaaattccttcaaattcaaatccaacaacactccaataacaag 25361238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 17636343 - 17636389
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaa 273  Q
    |||||||||||||||||| |||||| | |||||||||||||| ||||    
T  17636343 tgaattctgctcattacctaaatggattcgctcattcccaaaataaa 17636389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 40266669 - 40266607
Alignment:
Q  226 atgaattctgctcatt-acccaaatggttccgctcattcccaaagtaaaagtccaaaatgccc 287  Q
    ||||||||||||| || |||||||||| |  |||||||||||||||||| | |||||||||||    
T  40266669 atgaattctgctcttttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgccc 40266607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 4847006 - 4846929
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcc-cctacgcatgttaacatg 304  Q
    ||||||| ||||||||||||| | |  |||||||| |||||||||| ||| ||||| || ||| ||||||||||||||    
T  4847006 gaattctactcattacccaaacgctatcgctcatttccaaagtaaatgtctaaaatacctcctgcgcatgttaacatg 4846929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 1145955 - 1145895
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgccc 287  Q
    |||||||||| |||||||||||   || ||||||||||||||||||| |  ||||||||||    
T  1145955 tgaattctgcacattacccaaacaatttcgctcattcccaaagtaaatgatcaaaatgccc 1145895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 6269221 - 6269305
Alignment:
Q  213 catgtctttcactatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgt 297  Q
    ||||||||  ||| |||||||||||||||| |||||  ||  ||||||||  ||| ||||| |||||||||| |||| |||||||    
T  6269221 catgtcttgaactttgaattctgctcattatccaaacagtatcgctcattttcaatgtaaatgtccaaaatgtccctgcgcatgt 6269305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 226 - 516
Target Start/End: Complemental strand, 43641053 - 43640753
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtg 325  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||| |  |||| ||||||||||||||||||| || |||||||||||||||||| |    
T  43641053 atgaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaacttgtgtagcgtgacttaagttgcg 43640954  T
Q  326 ctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacaca--cacaaatcccaattttctc 423  Q
    ||  ||||||||||||||||||| |||| | ||||||||||||| ||||  ||||||| ||||||||||||||||||||  |||||||| ||||||||||    
T  43640953 ctacgtgacttaagtcacgctatatgctataattagcccaggcagaaccacattctgcctcattttcaaacacaacacacacacaaatctcaattttctc 43640854  T
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaa--------caacactccaacaacaagaacaagtaagctttcacttaaattatgttggt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||| ||||||||||||||| |||||    
T  43640853 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaaccctccaaccctccaacaacaagaacaagtaagttttcacttaaattatattggt 43640754  T
Q  516 a 516  Q
    |    
T  43640753 a 43640753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 310 - 516
Target Start/End: Complemental strand, 28707090 - 28706882
Alignment:
Q  310 cgtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacaca- 408  Q
    |||||||||||||| |||  |||||||||||||||||| |||||||||||| | |||||| ||||| ||| ||||||||||||||||||||||||||||     
T  28707090 cgtgacttaagttgcgctacgtgacttaagtcacgctacgtgctgttattaactcaggcagaacctcattatgcatcattttcaaacacaacacacacac 28706991  T
Q  409 -aatcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaatt 507  Q
     |||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28706990 aaatctcaattttctctcaaattacccaagttcaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaggtaagctttcacttaaatt 28706891  T
Q  508 atgttggta 516  Q
    |||||||||    
T  28706890 atgttggta 28706882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 255 - 516
Target Start/End: Complemental strand, 33800549 - 33800273
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct-gt------------gtgacttaagtc 341  Q
    |||||||||| |||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||  || ||            |  |||||||||    
T  33800549 cgctcattcctaaagtaaatgtctaaaatgcccttgcgcatgttaacatgcgtagcgtgacttaagttgcactagttataagaggaacgcaacttaagtc 33800450  T
Q  342 acgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacaca--aatcccaattttctctcaaattacccaactc 439  Q
    | |||| |||||||||||||  ||| || ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||     
T  33800449 atgctacgtgctgttattaggtcagacataacctcattctgcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattacccaactt 33800350  T
Q  440 caaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33800349 caaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 33800273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 33220867 - 33220786
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 307  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33220867 atgaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgcgt 33220786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 23559061 - 23558970
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  23559061 gaattctgctcattatccaaatggttccgctcattgccaaggtaaaagtccaaaatgcccctacgcatgttaacttacgtagcgtgagttaa 23558970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 5967315 - 5967237
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| |  | |||||||||||||||||||||||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcg 5967237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 9384617 - 9384707
Alignment:
Q  229 aattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||  ||||||||||||||||||  |||| |||| |||||||||| |||||||||  |||||||||||||||||| ||||    
T  9384617 aattctgctcattattcaaatggttccgctcattttcaaaataaatgtccaaaatgtccctacgcaacttaacatgcgtagcgtgagttaa 9384707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 9418585 - 9418634
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9418585 atgaattctgctcattacccaaatggtttcgctcattcccaaagtaaaag 9418634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 37687392 - 37687335
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaat 283  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||    
T  37687392 atgaattctgcttattacccaaatggttccgctcatttccaaagtaaatgtccaaaat 37687335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 34276191 - 34276283
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||||||||||   |  |||| ||| |||||||||||||  |||||||||||| |||||||||| |||||||||||| ||||    
T  34276191 tgaattctgctcattacccaaacaatatcgcttatttccaaagtaaaagtaaaaaatgcccctatgcatgttaacttgcgtagcgtgagttaa 34276283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 16575062 - 16575125
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| | |||||||||||||| |||||||||||||||||||||| ||||||    
T  16575062 tctctcaaatcacccaaattcaaaattccttcaagttcaaatcaaacaacactccaataacaag 16575125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 424 - 483
Target Start/End: Original strand, 40414107 - 40414166
Alignment:
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  40414107 tcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 40414166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 43692510 - 43692573
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||| ||||| |||||||||||||||||||||| ||||||    
T  43692510 tctctcaaatcacccaaatccaaaattcattcaaattcaaatcaaacaacactccaataacaag 43692573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 34279640 - 34279560
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 307  Q
    |||||||||||||||||  |||||| | |||||||||| |||||||| |  | |||||||||||| |||||||||||||||    
T  34279640 tgaattctgctcattacttaaatggattcgctcattcctaaagtaaatgatcgaaatgcccctacacatgttaacatgcgt 34279560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 4640874 - 4640795
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||||||  ||  |||||||| |||||||||||| | ||||||||||||| ||  ||||||||||    
T  4640874 tgaattctgctcattacccaaactgtatcgctcatttccaaagtaaaagactaaaatgcccctacacaacttaacatgcg 4640795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 234 - 288
Target Start/End: Complemental strand, 9448769 - 9448715
Alignment:
Q  234 tgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccc 288  Q
    ||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||    
T  9448769 tgctcattatccaaatggtttcactcattctcaaagtaaaagtccaaaatgcccc 9448715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 33220021 - 33220078
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaat 283  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||||    
T  33220021 tatgaattctgctcattatccaaatggttccgctcatt-ccaaagtaaatgttcaaaat 33220078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 14998822 - 14998759
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||||  |||||| |||||||||||||| || |||| |||||||||||||| ||||||    
T  14998822 tctctcaaattgtccaacttcaaaattccttcaagttaaaataaaacaacactccaataacaag 14998759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 43635129 - 43635208
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||| ||||| |||||||||||| | ||| | |||||||| ||| | | ||||| ||||||||||||||||||    
T  43635129 tgaattctgcttattactcaaatggttccgtttatttctaaagtaaatgtctatattgcccgtacgcatgttaacatgcg 43635208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 37686616 - 37686693
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    ||||||| ||| |||||||||| ||| || |||||||||||||||||||| |||||| || | ||||  |||||||||    
T  37686616 gaattctcctctttacccaaatcgtttcgttcattcccaaagtaaaagtctaaaatggccttgcgcaacttaacatgc 37686693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 31762240 - 31762286
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaa 273  Q
    ||||||||||||||||  ||||||| | |||||||||||||||||||    
T  31762240 tgaattctgctcattattcaaatggattcgctcattcccaaagtaaa 31762286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 43995919 - 43995969
Alignment:
Q  239 attacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 289  Q
    |||||| ||||||||||||||||| | |||||||||||| ||||| |||||    
T  43995919 attacctaaatggttccgctcatttctaaagtaaaagtcgaaaatacccct 43995969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 231 - 516
Target Start/End: Complemental strand, 26604248 - 26603950
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct-gt 329  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| | |||||||||| ||||  || ||| ||    
T  26604248 ttctgctcattactcaaatggttccgctcattctcaaagtaaaagtttaaaatgcccctacgcatgttaacttacgtagcgtgagttaacatgcgctagt 26604149  T
Q  330 ------------gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatcccaat 417  Q
                || ||||||||||||||| ||||||| |||||||||| || |||||  |||||| |||||||||||||  ||||||||||||  ||||    
T  26604148 tatacgagaaacgtaacttaagtcacgctacgtgctgtaattagcccagacataacctcgttctgcctcattttcaaacaacacacacacaaatatcaat 26604049  T
Q  418 tttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26604048 tttctctcaaattactcaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttaacttaaattatgttggta 26603950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 258 - 516
Target Start/End: Complemental strand, 48221746 - 48221481
Alignment:
Q  258 tcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgtta 357  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||| |||||||||||||||||| |||  |||||||||||||||||| ||||||| |    
T  48221746 tcattcccaaagtaaatgtccaaaatacccctacgcatgctaacatgtgtagcgtgacttaagttgcgctacgtgacttaagtcacgctacgtgctgtaa 48221647  T
Q  358 ttagcccaggcaaaaccttattctgcatcattttcaaacacaacacac--acaaatcccaattttctctcaaattacccaactccaaaattccttcaact 455  Q
    ||| ||||| || ||||   |||||| |||||||||||||  ||||||  ||||||  || |||||||||||||||||||||||||||||||||||||||    
T  48221646 ttaacccagccagaacc---ttctgcctcattttcaaacaacacacacatacaaatttcatttttctctcaaattacccaactccaaaattccttcaact 48221550  T
Q  456 tcaaatcaaac--------aacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48221549 tcaaatcaaacaacactctaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 48221481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 333 - 516
Target Start/End: Original strand, 30359822 - 30360005
Alignment:
Q  333 acttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatcccaattttctctcaaattac 432  Q
    |||||||||||||||  |||||| |||||| || ||| ||||| ||||||| |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  30359822 acttaagtcacgctacatgctgtaattagctcaagcagaacctcattctgcctcattttcaaacaacacacacacaaatctcaattttctctcaaattac 30359921  T
Q  433 ccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30359922 ccaactccaaaattccttgaacttcaaatcaaacaacactccaacaacaagaataagtaagctttcacttaaattatgttggta 30360005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 2355658 - 2355752
Alignment:
Q  422 tctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  2355658 tctcaaattatccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaacatcaagtaagctttcacttaaattatgttggta 2355752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 311 - 478
Target Start/End: Complemental strand, 20379612 - 20379437
Alignment:
Q  311 gtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacac------- 403  Q
    ||||||||||||| ||   |||||||||||||||||| ||||||| ||||||| |  || ||||| ||||||| |||||||||||||  ||||           
T  20379612 gtgacttaagttgcgccacgtgacttaagtcacgctacgtgctgtaattagcctaaacagaacctcattctgcctcattttcaaacaacacacgcacaca 20379513  T
Q  404 -acacaaatcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaaca 478  Q
     ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20379512 aacacaaatctcatttttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaaca 20379437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 20379746 - 20379651
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||||||||||    
T  20379746 gaattatgctcattatctaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcaacttaatatgcatagcgtgacttaagttg 20379651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 38790884 - 38790974
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattc-ccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||| |||||||||| ||||||||  |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||    
T  38790884 gaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaacatgc--agcgtgacttaa 38790974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 5247 - 5172
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||||| | ||||||||||||||||||| | || |||||||||||||||||||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcg 5172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 228 - 323
Target Start/End: Complemental strand, 38792126 - 38792031
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    ||||||| |||||||| ||||||||| | ||||||| ||||||||||||| ||||| ||||||| | || ||||||||||||||||||||||||||    
T  38792126 gaattctactcattactcaaatggtttcactcattctcaaagtaaaagtctaaaatacccctacacttgataacatgcgtagcgtgacttaagttg 38792031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 31823589 - 31823698
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct 327  Q
    |||||||||||||||||||||   |  |||||||||||||| ||||  |||||||||||||| | ||||||||||||||| |||| |||||||||| |||    
T  31823589 gaattctgctcattacccaaacaatatcgctcattcccaaaataaatatccaaaatgcccctgcacatgttaacatgcgttgcgtaacttaagttgcgct 31823688  T
Q  328 gtgtgactta 337  Q
      ||||||||    
T  31823689 acgtgactta 31823698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 39477887 - 39477824
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  39477887 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 39477824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 44552780 - 44552689
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||||||||   |  ||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||| ||||| ||||    
T  44552780 gaattctgctcattacccaaacaatatcgctcattctcaaagtaaaagtcgaaaatgctcctacgcatgttaacttgcgtaacgtgagttaa 44552689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 1537325 - 1537246
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||||||  ||  || |||||| ||||||||| || |||||||||||| ||||||||||||||||    
T  1537325 tgaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaacatgcg 1537246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 8727062 - 8726999
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| ||||||||| |||||| |||||||||||||||||||||| ||||||    
T  8727062 tctctcaaatcacccaaatccaaaatttcttcaagttcaaatcaaacaacactccaataacaag 8726999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 18236934 - 18236997
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| | |||||||||||||| |||||||||||||||||||||| ||||||    
T  18236934 tctctcaaatcacccaaattcaaaattccttcaaattcaaatcaaacaacactccaataacaag 18236997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 313
Target Start/End: Original strand, 30359704 - 30359788
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtg 313  Q
    |||||||||||| ||||||||   |||||||||||||||||||||||||||||||| | ||||| || ||||||| | |||||||||    
T  30359704 tgaattctgctctttacccaac--gttccgctcattcccaaagtaaaagtccaaaacgtccctatgcttgttaacttacgtagcgtg 30359788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 42548161 - 42548216
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaat 283  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  42548161 gaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 5060848 - 5060905
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgc 285  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||  |||||||    
T  5060848 gaattctactcattatccaaatggttccgctcattcccaaagtaaaagttgaaaatgc 5060905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 483
Target Start/End: Complemental strand, 7414713 - 7414652
Alignment:
Q  422 tctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||| |||||| | |||||||||||||| |||||||||||||||||||||| ||||||    
T  7414713 tctcaaatcacccaaattcaaaattccttcaagttcaaatcaaacaacactccaataacaag 7414652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 31266900 - 31266956
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaa 476  Q
    |||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||    
T  31266900 tctctcaaatcacccaaatccaaaatttcttcaagttcaaatcaaacaacactccaa 31266956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 28065782 - 28065845
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |  ||| ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  28065782 tctctcaaataattcaaatccgaaattccttcaacttcaaatcaaacaacactccaataacaag 28065845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 424 - 483
Target Start/End: Original strand, 40592102 - 40592161
Alignment:
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||| |||||| |||||||||||||||| |||||||||||||||||| ||| ||||||    
T  40592102 tcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacacttcaataacaag 40592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 19365473 - 19365395
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||| |||||| | ||||||||||||||  ||| | || |||| ||||||||||| ||||||||||    
T  19365473 gaattctgctcattacctaaatggattcgctcattcccaaataaaatgaccgaaatacccctacgcattttaacatgcg 19365395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 26502509 - 26502431
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||| ||||| ||| | |||||||| ||||||||| ||||||||||||||||||||| ||||| ||| | ||||||||    
T  26502509 gaattatgctccttatctaaatggtttcgctcattctcaaagtaaaagtccaaaatgcgcctacacatttcaacatgcg 26502431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 26590205 - 26590283
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||| ||||| ||| | |||||||| ||||||||| ||||||||||||||||||||| ||||| ||| | ||||||||    
T  26590205 gaattatgctccttatctaaatggtttcgctcattctcaaagtaaaagtccaaaatgcgcctacacatttcaacatgcg 26590283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 38386178 - 38386252
Alignment:
Q  232 tctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||| |||||||| | |||||||| |||||||||| |    |||||||||||||||||||||||||||    
T  38386178 tctgctcattatccaaatggattcgctcatttccaaagtaaatgattgaaatgcccctacgcatgttaacatgcg 38386252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 25428731 - 25428792
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 289  Q
    ||||| ||||| ||||||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  25428731 gaattttgctctttacccaaacggttctgctcattcccaaagtaaatatccaaaatgcccct 25428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 13798684 - 13798736
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacact 472  Q
    |||||||||| | |||| |||||||||||||||| ||||||||||||||||||    
T  13798684 tctctcaaatcatccaaatccaaaattccttcaaattcaaatcaaacaacact 13798736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 41957005 - 41957079
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||| |||||||||| ||||| |||||||| ||||| |||||||||||||| ||| || | |||||||||||||    
T  41957005 ttctgcacattacccaa-tggtttcgctcatttccaaaataaaagtccaaaatacccataagtatgttaacatgcg 41957079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 26009369 - 26009455
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtga 314  Q
    ||||||||||| ||||||||| | ||  |||||||||||||||||| | |||||||   |||||||||||||||   ||||||||||    
T  26009369 gaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaactcacgtagcgtga 26009455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 28138759 - 28138820
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 289  Q
    ||||||||||| ||||||||||| ||  |||||||||||||||||| | ||||||| |||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 2355584 - 2355650
Alignment:
Q  327 tgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaa 394  Q
    ||||||||||||||||||||| |||||| | |||| ||||||| ||||| ||||||| |||| |||||    
T  2355584 tgtgtgacttaagtcacgctacgtgctgctcttag-ccaggcagaacctcattctgcctcatcttcaa 2355650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 5061809 - 5061730
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatg 304  Q
    ||||||||||||||||||||||||||| | | |||||| ||||| |||| |  | ||||| |  ||||||||||||||||    
T  5061809 tatgaattctgctcattacccaaatggattcactcatttccaaaataaatgaacgaaatgtcgttacgcatgttaacatg 5061730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 12082424 - 12082487
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||| |||| ||| || ||| ||||||| ||||||| ||||||||||||||||||| ||||||    
T  12082424 tctcttaaatcaccaaaatccgaaattccatcaactttaaatcaaacaacactccaataacaag 12082487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 10527062 - 10527004
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcc 286  Q
    ||||||||||| |||||||||||| | |  |||||||||||||||| ||||||| ||||    
T  10527062 gaattctgctctttacccaaatggattcaatcattcccaaagtaaatgtccaaattgcc 10527004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 476
Target Start/End: Original strand, 11823870 - 11823900
Alignment:
Q  446 tccttcaacttcaaatcaaacaacactccaa 476  Q
    |||||||||||||||||||||||||||||||    
T  11823870 tccttcaacttcaaatcaaacaacactccaa 11823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 42548839 - 42548781
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatg 284  Q
    ||||||||||||| |  ||||||||||| ||||||||  ||||||||||| ||||||||    
T  42548839 atgaattctgctcttcccccaaatggtttcgctcattttcaaagtaaaagaccaaaatg 42548781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 28139513 - 28139452
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 289  Q
    ||||||||||  |||||||||||| |  || ||||||||||||||| | |||||||||||||    
T  28139513 gaattctgctttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccct 28139452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Complemental strand, 31853352 - 31853315
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcatt 262  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  31853352 tatgaattctgctcattatccaaatagttccgctcatt 31853315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 227 - 516
Target Start/End: Complemental strand, 35060974 - 35060694
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgc 326  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||             
T  35060974 tgaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaacatgcgtagcgtgactt--------- 35060884  T
Q  327 tgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacaca--aatcccaattttctct 424  Q
              |||||||||||  |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  35060883 ----------aagtcacgctacatgctgttattagcccaagcagaacctcattctgcatcattttcaaacacaacacacacacaaatctcaattttctct 35060794  T
Q  425 caaattacccaactccaaaattccttcaacttcaaatcaaacaacactcc--------aacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||||    
T  35060793 caaattacccaactccataattccttcaacttcaaatcaaacaacactccaacactccaacaacaagaacaagtaaactttcacttaaattatgttggta 35060694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 17436034 - 17436120
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgt 312  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  17436034 atgaattttgctcattattcaaatggttccgctcattcccaaagtaaaagtctaaaatgcctctacgcatgttaacttgcgtagcgt 17436120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 31522614 - 31522534
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||| |||||    
T  31522614 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaacttgcgt 31522534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 14153354 - 14153432
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaacatgcg 14153432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 323
Target Start/End: Complemental strand, 14154657 - 14154560
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    |||||||||| ||||||||||||  |   |||||||||| ||| |||| |||||||||| |||| |||||||||||||| ||||||||||||||||||    
T  14154657 atgaattctgatcattacccaaaccgaatcgctcattcctaaaataaatgtccaaaatgtccctgcgcatgttaacatgtgtagcgtgacttaagttg 14154560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 420 - 516
Target Start/End: Original strand, 28050777 - 28050867
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    ||||||||||||| ||| | | ||||||||||||||||||||||||||||||||      ||| |||||||||| ||||||||||||||||||||||    
T  28050777 tctctcaaattactcaaattcgaaattccttcaacttcaaatcaaacaacactc------caataacaagtaagttttcacttaaattatgttggta 28050867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 800532 - 800595
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  800532 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 800595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 32275850 - 32275771
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| | |  ||||||||||| ||| |||||||||||    
T  32275850 tgaattatgctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgcaagttaacatgcg 32275771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 17436619 - 17436541
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||| | || ||||| |||||| ||||||||||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaacatgcg 17436541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 32274184 - 32274262
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||| |||||||| ||||||||| | ||||||||||||||||||| |  | |||||||||||||||||||||||||||    
T  32274184 gaattatgctcattgcccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaacatgcg 32274262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 4321815 - 4321723
Alignment:
Q  229 aattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagt 321  Q
    |||||||||||||||| |||| ||| ||||||||  ||||||||| |  ||||||||| ||||||| ||||||||||||  ||||||||||||    
T  4321815 aattctgctcattacctaaatagtttcgctcattttcaaagtaaatgatcaaaatgcctctacgcaagttaacatgcgttacgtgacttaagt 4321723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 23608427 - 23608500
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    |||||||||||||||  |||||| ||||| ||||||||||| |||||||| |||||  ||||||||||||||||    
T  23608427 gaattctgctcattattcaaatgattccgttcattcccaaaataaaagtctaaaatatccctacgcatgttaac 23608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 14830419 - 14830470
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||||||||||    
T  14830419 cgctcattcccaaagtaaatgtccaaaatgtccctacacatgttaacatgcg 14830470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 4286581 - 4286637
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaa 476  Q
    |||||||||| | |||| || ||||||||||||| ||||||||||||||||||||||    
T  4286581 tctctcaaatcatccaaatcaaaaattccttcaagttcaaatcaaacaacactccaa 4286637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 3098216 - 3098153
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| | | || ||||||||||||| || |||||||||||||||||||||| ||||||    
T  3098216 tctctcaaatcatctaaatccaaaattcctttaagttcaaatcaaacaacactccaataacaag 3098153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 483
Target Start/End: Original strand, 5570640 - 5570701
Alignment:
Q  422 tctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||| |||||| | || ||||| ||||| |||||||||||||||||||||| ||||||    
T  5570640 tctcaaatcacccaaattcataattctttcaagttcaaatcaaacaacactccaataacaag 5570701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 468
Target Start/End: Complemental strand, 14485465 - 14485421
Alignment:
Q  424 tcaaattacccaactccaaaattccttcaacttcaaatcaaacaa 468  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||    
T  14485465 tcaaattacccacatccaaaattccttcaacttaaaatcaaacaa 14485421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 25400850 - 25400926
Alignment:
Q  245 caaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagt 321  Q
    |||||||||||||||||| |||||||||| || |||||| |||||||| |  |||| ||||||  ||| ||||||||    
T  25400850 caaatggttccgctcatttccaaagtaaatgttcaaaatacccctacgtaacttaagatgcgttacgttacttaagt 25400926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 516
Target Start/End: Complemental strand, 14483551 - 14483516
Alignment:
Q  481 aagaacaagtaagctttcacttaaattatgttggta 516  Q
    ||||||||||||| ||||||||||||||||||||||    
T  14483551 aagaacaagtaagttttcacttaaattatgttggta 14483516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 806545 - 806618
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||| |||||||||  |||  |||||||| ||||||||| ||| ||||| | |||||| ||||||||    
T  806545 gaattctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaatactcctacgtatgttaac 806618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 14430944 - 14431017
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||  ||||| ||| ||||| ||||||| | |||||||| ||  |||||| ||||||||||||||||    
T  14430944 gaattctgctatttacctaaacggttctgctcatttctaaagtaaatgtttaaaatgtccctacgcatgttaac 14431017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 31483693 - 31483721
Alignment:
Q  278 caaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||||||||||||||||    
T  31483693 caaaatgcccctacgcatgttaacatgcg 31483721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 228 - 516
Target Start/End: Complemental strand, 50069312 - 50069001
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct 327  Q
    |||||||||||||||||||||  |   ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||  ||    
T  50069312 gaattctgctcattacccaaacagcatcgctcattcccaaagtaaatgtccaaaatgcccctgcgcatgttaacatacgtagcgtgagttaagttgcact 50069213  T
Q  328 -gt------------gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacaca------ 408  Q
     ||            |  ||||||||||||||||||| ||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||          
T  50069212 agttataagcggaacgcaacttaagtcacgctatgtgttgttattagcccaggcagaacctcatcatgcatcattttcaaacacaacacacacacacaca 50069113  T
Q  409 ----aatcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaa 504  Q
        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50069112 cacaaatctcaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaa 50069013  T
Q  505 attatgttggta 516  Q
    ||||||||||||    
T  50069012 attatgttggta 50069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 333 - 516
Target Start/End: Original strand, 45688445 - 45688628
Alignment:
Q  333 acttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatcccaattttctctcaaattac 432  Q
    ||||||||||||||||||||||| |||||||||   | ||||| ||||||| |||||||||||||  ||||||||||||| || |||||||||||||||     
T  45688445 acttaagtcacgctatgtgctgtaattagcccaaatagaacctcattctgcctcattttcaaacaacacacacacaaatctcatttttctctcaaattat 45688544  T
Q  433 ccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45688545 ccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagttttcacttaaattatgttggta 45688628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 226 - 516
Target Start/End: Original strand, 11821158 - 11821459
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtg 325  Q
    ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| |||| |||||||||| | ||||  |||| ||||  || |    
T  11821158 atgaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatgctcctatgcatgttaacttacgtattgtgagttaacatgcg 11821257  T
Q  326 ctgt---------------gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaa 410  Q
    || |               || ||||||||||||||| |||| || ||||||||||    ||||| |||||||||||||||||||||  ||||||| |||    
T  11821258 ctatagttataagagaaacgtaacttaagtcacgctacgtgcagtaattagcccag----aacctcattctgcatcattttcaaacaacacacacataaa 11821353  T
Q  411 tcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatg 510  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||    
T  11821354 tctcaattttctctcaaattacccaactctaaaattccttcaacttcaaattaaacaagactccaacaacaagaataagtaagctttcacttaaattatg 11821453  T
Q  511 ttggta 516  Q
    ||||||    
T  11821454 ttggta 11821459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 308 - 516
Target Start/End: Complemental strand, 47488974 - 47488764
Alignment:
Q  308 agcgtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttatta--gcccaggcaaaaccttattctgcatcattttcaaacacaacaca- 404  Q
    |||||| |||||||||  ||  |||||||||||||||||| ||||||||||||  |||||| || ||||| ||||||||||||||||||||||||||||     
T  47488974 agcgtggcttaagttgctctacgtgacttaagtcacgctacgtgctgttattatagcccagtcagaacctcattctgcatcattttcaaacacaacacac 47488875  T
Q  405 -----cacaaatcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttca 499  Q
         |||||||| ||||||||||||||||||||||||||||||||||      |||||||||||| || |||||||||| |||||||||||||||||||    
T  47488874 acacacacaaatctcaattttctctcaaattacccaactccaaaattc------cttcaaatcaaataatactccaacaataagaacaagtaagctttca 47488781  T
Q  500 cttaaattatgttggta 516  Q
    |||||||||||||||||    
T  47488780 cttaaattatgttggta 47488764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 342 - 516
Target Start/End: Original strand, 17696335 - 17696510
Alignment:
Q  342 acgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacac---aaatcccaattttctctcaaattacccaact 438  Q
    |||||| ||||||||||||  ||||||| | ||| ||||||| |||||||||||||  ||| ||||   ||||| ||||| | |||||||||| ||||||    
T  17696335 acgctacgtgctgttattattccaggcagagcctcattctgcctcattttcaaaca--acatacacttaaaatctcaattctttctcaaattatccaact 17696432  T
Q  439 ccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
     |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||    
T  17696433 tcaaaattccttcaacttcaaatcaaacaacactccaacaacaagaaaaaataagctttcacttaaaatatgttggta 17696510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 224 - 319
Target Start/End: Original strand, 28442918 - 28443013
Alignment:
Q  224 ctatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||| ||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| || ||||||||| ||||    
T  28442918 ctatgacttctgctcattaatcaaatggttccgctcattcccaaagtaaaagttgaaaatgcccctacgcatgttaacttgtgtagcgtgagttaa 28443013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 39650195 - 39650274
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  39650195 tgaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaacatgcg 39650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 45688308 - 45688385
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45688308 gaattccgctcattatccaaatggttctgctcattcccaaagtaaaagttcaaaatgcccctacgcatgttaacatgc 45688385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 3792559 - 3792635
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacat 303  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||||    
T  3792559 tgaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacgcatgttaacat 3792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 45691126 - 45691050
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatg 304  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45691126 gaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaacatg 45691050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 45691268 - 45691196
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaa 300  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  45691268 gaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 45691410 - 45691338
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaa 300  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  45691410 gaattttgctcattactcaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacacatgttaa 45691338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 28476060 - 28475982
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |  | |||||||||||| ||||||||||||||    
T  28476060 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgatcgaaatgcccctacacatgttaacatgcg 28475982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 28446610 - 28446530
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||| | |  |||||||||||||||||||||||||||    
T  28446610 atgaattttgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcg 28446530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 33403204 - 33403113
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||| |||||||||||||||  ||  |||||||| |||||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||    
T  33403204 gaattatgctcattacccaaacagtatcgctcatttccaaagtaaaagtcgaaaatgcccctacgcatgttaacttgcgtaacgtgagttaa 33403113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 21761084 - 21761020
Alignment:
Q  419 ttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  21761084 ttctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 21761020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 49033808 - 49033725
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgt 312  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||| ||||||| |||||||  ||||| ||||||||||    
T  49033808 gaattctgctcattattcaaatggttccgctcattcccaaagtaaatgtcc-aaatgcctctacgcaatttaacttgcgtagcgt 49033725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 3658021 - 3658084
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  3658021 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 3658084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 33617644 - 33617722
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||| |||||||||||||||||| | ||||||||| ||||||||| | || ||||||||||| |||||||||||||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaacatgcg 33617722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 15471056 - 15471121
Alignment:
Q  418 tttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||| ||||||    
T  15471056 tttctctcaaatcacccaaatccaaaattccttcaagttcaaagcaaacaacactccaataacaag 15471121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 21485481 - 21485416
Alignment:
Q  418 tttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  21485481 tttctctgaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 21485416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 28474792 - 28474869
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    |||||||||||||||||||||||| | | |||||||||||| |||| | |  ||||||||||||||||||||||||||    
T  28474792 gaattctgctcattacccaaatggattcactcattcccaaaataaatgactgaaatgcccctacgcatgttaacatgc 28474869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 418 - 483
Target Start/End: Complemental strand, 39225055 - 39224990
Alignment:
Q  418 tttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||||    
T  39225055 tttctttcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataacaag 39224990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 35577575 - 35577511
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||| |||||||||||| ||||    
T  35577575 cgctcattcccaaagtaaaagtcgaaaatgcccctacatatgttaacttgcgtagcgtgagttaa 35577511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 26088839 - 26088902
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||| ||||||    
T  26088839 tctctcaaatcacccaaatccaaaattacttcaacttcaaatcaaacaacacaccaataacaag 26088902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 48025556 - 48025647
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||| ||||| |||||||||  ||  ||||||||||||||||| ||||  ||||||||| ||||||||||||| |||||||||||| ||||    
T  48025556 gaattatgctcgttacccaaacagtatcgctcattcccaaagtagaagttgaaaatgcccttacgcatgttaacttgcgtagcgtgagttaa 48025647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 2094441 - 2094367
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||||||||||||||| |||| ||||||| |||||||||| ||| |||||  |||||||||| |||||    
T  2094441 tgaattctgctcattacccaaattgttctgctcatttccaaagtaaatgtctaaaatatccctacgcatattaac 2094367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 3792532 - 3792454
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatg-cccctacgcatgttaacatgc 305  Q
    ||||| ||||||||| |||||||||| |||||||| |||| |||||||||||||||| ||| ||| |||||||||||||    
T  3792532 gaattatgctcattatccaaatggtttcgctcatttccaacgtaaaagtccaaaatgtcccatacacatgttaacatgc 3792454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 18169388 - 18169451
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||  |||||||||||||| ||||||| ||||||    
T  18169388 tctctcaaatcacccaaatccaaaattccttcatgttcaaatcaaacaatactccaataacaag 18169451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 41875731 - 41875668
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| | |||| || ||||||||||||| |||||||||||||||||||||| ||||||    
T  41875731 tctctcaaatcatccaattctaaaattccttcaagttcaaatcaaacaacactccaataacaag 41875668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 48569258 - 48569195
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| ||| || |||||||||||||||| |||||||||||||||| ||||| ||||||    
T  48569258 tctctcaaatcaccaaaatccaaaattccttcaagttcaaatcaaacaacattccaataacaag 48569195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 50065476 - 50065555
Alignment:
Q  226 atgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    ||||||||| ||||||||| ||||||   ||||||||||||||||||| | || ||||||| || |||||||||||||||    
T  50065476 atgaattctactcattaccaaaatggaatcgctcattcccaaagtaaatgaccgaaatgcctctgcgcatgttaacatgc 50065555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 5602943 - 5603005
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 289  Q
    |||||||||||| |||||||||||| |  |||||||||||||||||| | |||||||||||||    
T  5602943 tgaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccct 5603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 37260991 - 37260918
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||| ||||| ||||||||| ||||  || ||||| ||||||||| |||||||||||||||| ||||||||||    
T  37260991 gaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccctatgcatgttaac 37260918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 35563532 - 35563583
Alignment:
Q  255 cgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||| | |  |||||||||||||||||||||||||||    
T  35563532 cgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaacatgcg 35563583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 483
Target Start/End: Complemental strand, 48707624 - 48707561
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| | |||| ||| |||||||||||| || ||||||||||||||||||| ||||||    
T  48707624 tctctcaaatcaaccaaatccgaaattccttcaagtttaaatcaaacaacactccaataacaag 48707561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 33401408 - 33401486
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||| |||||||||  ||||||| | ||||||||| ||||||||| | || |||||||| || |||||||||||||||    
T  33401408 gaattttgctcattagtcaaatggattcgctcattctcaaagtaaatgaccgaaatgcccttatgcatgttaacatgcg 33401486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 35392183 - 35392109
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    |||| ||||||| |||||||||| |||  |||||||||||||||||| || |||||| |  ||||||||||||||    
T  35392183 tgaactctgctctttacccaaattgttttgctcattcccaaagtaaatgttcaaaatacttctacgcatgttaac 35392109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 35563363 - 35563438
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||    ||||| | ||||||||||||||||||| | |  |||||||||| ||||||||||||||||    
T  35563363 tgaattctgctcatta----aatggattcgctcattcccaaagtaaatgactgaaatgcccctgcgcatgttaacatgcg 35563438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 483
Target Start/End: Complemental strand, 49599681 - 49599639
Alignment:
Q  441 aaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  49599681 aaaattccttcaagttcaaatcaaacaacactccaataacaag 49599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 35391487 - 35391548
Alignment:
Q  240 ttacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||| |||||||| || |||||||||||||||| ||||||||| | | |||||||||||||    
T  35391487 ttacctaaatggtttcgttcattcccaaagtaaatgtccaaaatactcatacgcatgttaac 35391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 3792296 - 3792360
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacg 292  Q
    ||||||||||||||||||||||| |||  ||||||| |||| |||| ||||||||| ||| ||||    
T  3792296 gaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaatacccttacg 3792360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 45688382 - 45688419
Alignment:
Q  282 atgcccctacgcatgttaacatgcgtagcgtgacttaag 320  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  45688382 atgcccctacgcatgttaacatgcgtagc-tgacttaag 45688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 46182398 - 46182348
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaaca 470  Q
    |||||||||| |||||| | ||||||||||||||  |||||||||||||||    
T  46182398 tctctcaaatcacccaaattcaaaattccttcaagctcaaatcaaacaaca 46182348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 9862967 - 9862914
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatg 284  Q
    |||||||| ||||||||||| || |||||||||||||| |||| ||| ||||||    
T  9862967 ttctgctctttacccaaatgatttcgctcattcccaaaataaatgtctaaaatg 9862914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 18841824 - 18841873
Alignment:
Q  433 ccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaa 482  Q
    |||| |||||||||||||||| || |||||||||||||| |||| |||||    
T  18841824 ccaaatccaaaattccttcaagtttaaatcaaacaacacaccaataacaa 18841873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 27037746 - 27037702
Alignment:
Q  458 aaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaa 505  Q
    ||||||||| ||||||||||||   |||||||||||||||||||||||    
T  27037746 aaatcaaactacactccaacaa---gaacaagtaagctttcacttaaa 27037702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 7e-78; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 229 - 516
Target Start/End: Complemental strand, 12969340 - 12969035
Alignment:
Q  229 aattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct- 327  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||     
T  12969340 aattctgctcattatctaaatggttccgctcattcc-aaagtaaaagttcaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgcgcta 12969242  T
Q  328 gt------------gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatccca 415  Q
    ||            || ||||||||||||||| ||||||| ||||||||||||| | ||| ||||||| |||||||||||||  ||||||||||||| ||    
T  12969241 gttataagataaacgtaacttaagtcacgctacgtgctgtaattagcccaggcagagcctcattctgcctcattttcaaaca--acacacacaaatctca 12969144  T
Q  416 attttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactcc--------aacaacaagaacaagtaagctttcacttaaatt 507  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||  |||||||||||||    
T  12969143 tttttctctcaaattacctaactccaaaattccttcaacttcaaatcaaacaacactccaacattccaacaacaagaacaagtaatttttcacttaaatt 12969044  T
Q  508 atgttggta 516  Q
    |||||||||    
T  12969043 atgttggta 12969035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 258 - 512
Target Start/End: Original strand, 22492476 - 22492745
Alignment:
Q  258 tcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgct-gt------------gtgacttaagtcacg 344  Q
    |||||||||||||||| || |||||||||||| ||||| |||||||| |||||||||||||||||| ||| ||            |  ||||||||||||    
T  22492476 tcattcccaaagtaaatgttcaaaatgcccctgcgcatattaacatgtgtagcgtgacttaagttgcgctagttataagaggaacgcaacttaagtcacg 22492575  T
Q  345 ctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacac--acacaaatcccaattttctctcaaattacccaactccaa 442  Q
     || |||||||||||||||||| || ||||| ||   ||||||||||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||    
T  22492576 ttacgtgctgttattagcccagacagaacctcatcaagcatcattttcaaacacaacacacacacaaatctcaattttctctcaaattatccaactccaa 22492675  T
Q  443 aattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgtt 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  22492676 aattccttcaacttcaaatcaaacaacactccaacaacaagaacaaataagctttcatttaaattatgtt 22492745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 308 - 516
Target Start/End: Original strand, 42119288 - 42119505
Alignment:
Q  308 agcgtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacaca--acacac 405  Q
    |||||||||||||||| |||  |||||||||||||||||| ||| ||||||||||||||||| ||||| ||  |||||||||||||||||||  ||||||    
T  42119288 agcgtgacttaagttgcgctacgtgacttaagtcacgctacgtgttgttattagcccaggcagaacctcatcatgcatcattttcaaacacaacacacac 42119387  T
Q  406 acaaatcccaattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaa--------caacactccaacaacaagaacaagtaagcttt 497  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||| ||||||||    
T  42119388 acaaatctcaattttctctcaaattttccaactccaaaattccttcaacttcaaatcaaacaatattccaacactccaacaacaagaacaa-taagcttt 42119486  T
Q  498 cacttaaattatgttggta 516  Q
    |||||||||||||||||||    
T  42119487 cacttaaattatgttggta 42119505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 227 - 361
Target Start/End: Original strand, 18387240 - 18387374
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgc 326  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||  || ||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  18387240 tgaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaacatgcgtagcgtgacttaagttgcgc 18387339  T
Q  327 tgtgtgacttaagtcacgctatgtgctgttattag 361  Q
    | ||||||||||||||||||| |||||||||||||    
T  18387340 tatgtgacttaagtcacgctacgtgctgttattag 18387374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 227 - 516
Target Start/End: Complemental strand, 37893087 - 37892797
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttgtgc 326  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| ||||  || |     
T  37893087 tgaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaacttacgtagcgtgagttaacatgcgt 37892988  T
Q  327 t-------------gtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatcc 413  Q
    |              ||| ||||||||||| ||| ||||||| |||||||||| || ||||| ||| ||| ||||| ||||| |  ||||||| |||||     
T  37892987 taggtataagataaatgtaacttaagtcacactacgtgctgtaattagcccagacagaacctcattgtgcctcattctcaaataacacacacataaatct 37892888  T
Q  414 caattttctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttg 513  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||            |||||||||||||||||||||||||| |||||||||||||||    
T  37892887 caattttctctaaaattagccaactccaaaattccctcaacttcaa------------tccaacaacaagaacaagtaagctttgacttaaattatgttg 37892800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 420 - 516
Target Start/End: Complemental strand, 17796956 - 17796860
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  17796956 tctctcaaattacccaaatccaaaattccttcaacttcaaattaaacaacactccaacaacaagaacacgtaagttttcacttaaattatgttggta 17796860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 308 - 438
Target Start/End: Original strand, 30760285 - 30760415
Alignment:
Q  308 agcgtgacttaagttgtgctgtgtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacac 407  Q
    ||||||||||||||||||||  ||||||||| ||| |||| ||| |||||||||||||| || || || ||| | ||||||||| |||||||||||||||    
T  30760285 agcgtgacttaagttgtgctacgtgacttaactcatgctacgtgttgttattagcccagacagaatctcattatacatcatttttaaacacaacacacac 30760384  T
Q  408 aaatcccaattttctctcaaattacccaact 438  Q
    ||||| |||||||||||||||||||||||||    
T  30760385 aaatctcaattttctctcaaattacccaact 30760415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 307
Target Start/End: Original strand, 8273245 - 8273324
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgt 307  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| | || ||||||||||||||||||||||||||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaacatgcgt 8273324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 11712961 - 11713036
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11712961 ttctgctcattacctagatggtttcgctcattcccaaagtaaaagtccaaaatgcccctacgtatgttaacatgcg 11713036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 228 - 306
Target Start/End: Original strand, 12967270 - 12967349
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagt-aaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  12967270 gaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaacatgcg 12967349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 11573632 - 11573724
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||||||||||   |  ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  11573632 tgaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcaaaaatgcccctacgtatgttaacttgcgtagcgtgagttaa 11573724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 42119191 - 42119252
Alignment:
Q  262 tcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagttg 323  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42119191 tcccaaagtaaatgtccaaaatgcccctacgcatgttaacatgtgtagcgtgacttaagttg 42119252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 20685006 - 20685070
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacg 292  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| ||||    
T  20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaatacccttacg 20685070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 481
Target Start/End: Original strand, 16706190 - 16706251
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaaca 481  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| ||||    
T  16706190 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaacactccaataaca 16706251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 939559 - 939650
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||  |||||| |||||||||||||||| ||||| |||||||||||||| | |||  ||||| || ||||||||| ||||    
T  939559 gaattctgctcattattcaaatgattccgctcattcccaatgtaaatgtccaaaatgccccaatgcaacttaacttgtgtagcgtgagttaa 939650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 32734150 - 32734213
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||| ||||||| ||||||    
T  32734150 tctctcaaatcacccaaatccaaaattccttcaagttcaaatcaaacaatactccaataacaag 32734213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 20686881 - 20686819
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccct 289  Q
    |||||||||||| |||  |||||| ||||||||||||| ||||||||||||||||||||||||    
T  20686881 tgaattctgctcgttattcaaatgtttccgctcattcctaaagtaaaagtccaaaatgcccct 20686819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 42241939 - 42241877
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaa 482  Q
    |||||||||| |||||| ||||||||||||| || |||||||||||||||||||||| |||||    
T  42241939 tctctcaaatcacccaaatccaaaattcctttaagttcaaatcaaacaacactccaataacaa 42241877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 18395051 - 18394970
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||||||||||||||||||||||   |  ||||||||||||||||||  |||||||||||| ||  |||||||||||||||    
T  18395051 tatgaattctgctcattacccaaacaatatcgctcattcccaaagtaattgtccaaaatgcctctgtgcatgttaacatgcg 18394970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 20147485 - 20147541
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaa 476  Q
    |||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||    
T  20147485 tctctcaaatcacacaaatccaaaattccttcaagttcaaatcaaacaacactccaa 20147541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 476
Target Start/End: Complemental strand, 26618186 - 26618130
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaa 476  Q
    |||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||    
T  26618186 tctctcaaatcatccaaatccaaaattccttcaagttcaaatcaaacaacactccaa 26618130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 24928686 - 24928749
Alignment:
Q  256 gctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||||||||| ||||||| ||||  ||||||||| |||||||||||| ||||    
T  24928686 gctcattcccaaagtaaaagtcgaaaatgctcctaaacatgttaacttgcgtagcgtgagttaa 24928749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 29905948 - 29906010
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| ||| || |||||||||||||||| |||||||||||||||||||||| ||||||    
T  29905948 tctctcaaatcaccaaa-tccaaaattccttcaagttcaaatcaaacaacactccaataacaag 29906010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 8277452 - 8277394
Alignment:
Q  242 acccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaa 300  Q
    |||||||||||||||||||||||||||||||| | || |||||||| |||||| |||||    
T  8277452 acccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccttacgcaagttaa 8277394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 22496154 - 22496076
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcg 306  Q
    ||||| ||||||||||| |||| ||  ||||||||  ||||||||| ||| ||||||||| ||||||||||||||||||    
T  22496154 gaattatgctcattacctaaatagtatcgctcattttcaaagtaaatgtctaaaatgcccttacgcatgttaacatgcg 22496076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 2154262 - 2154339
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgc 305  Q
    |||||||||||||||||||||   |  |||||||||||||||||||||  ||||||| |||||||||  |||||||||    
T  2154262 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagatcaaaatgtccctacgcaacttaacatgc 2154339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 24929412 - 24929364
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    |||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  24929412 tgaattctgctcattaccaaaatggtttcgctgattcccaaagtaaaag 24929364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 25678272 - 25678363
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||||||| |||||  ||  ||||||||  ||||||||||||| ||||||| ||||  ||||||||| |||||||| ||| ||||    
T  25678272 gaattctgctcattatccaaacagtatcgctcattttcaaagtaaaagtcaaaaatgctcctaaacatgttaacttgcgtagcatgagttaa 25678363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 29110552 - 29110595
Alignment:
Q  439 ccaaaattccttcaacttcaaatcaaacaacactccaacaacaa 482  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  29110552 ccaaaattccttcaagttcaaatcaaacaacactccaataacaa 29110595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 22788063 - 22787999
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacg 292  Q
    ||||||||||| |||||||||||| |  | |||||||||||||||| | ||||||| ||||||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaatacccctacg 22787999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 25678967 - 25678919
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    |||| ||||||||||||| |||||||| |||| ||||||||||||||||    
T  25678967 tgaagtctgctcattaccaaaatggtttcgctgattcccaaagtaaaag 25678919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 31133179 - 31133270
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    ||||||||||| ||||||||||  || ||||||||   |||||||| |||  |||||||||||| || |||||||||||   ||||||||||    
T  31133179 gaattctgctctttacccaaatcatttcgctcatttttaaagtaaatgtcataaatgcccctacacaagttaacatgcgctacgtgacttaa 31133270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 25389929 - 25389869
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgccc 287  Q
    |||||||||||| |||| ||||||| |  |||||||| ||||||||| | |||||||||||    
T  25389929 tgaattctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaatgccc 25389869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 330 - 516
Target Start/End: Complemental strand, 310 - 124
Alignment:
Q  330 gtgacttaagtcacgctatgtgctgttattagcccaggcaaaaccttattctgcatcattttcaaacacaacacacacaaatcccaattttctctcaaat 429  Q
    |||||||||||||||||  |||||||| |||||||| | | ||||| || |||| |||||||||||||  | ||||||| ||| ||||||||||||||||    
T  310 gtgacttaagtcacgctccgtgctgttcttagcccaagaagaacctcatcctgcctcattttcaaacaacagacacacacatctcaattttctctcaaat 211  T
Q  430 tacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaagaacaagtaagctttcacttaaattatgttggta 516  Q
    || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  210 tatccaactccaaaatttcttcaacttcaaatcaaacaacactccagcaacaagaacaagtatgctttcacttaaattatgttggta 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 442 - 369
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||| ||| |||||||| || ||||||||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaaaatcccaaatgcccttatgcatgttaac 369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 1474 - 1568
Alignment:
Q  227 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaagt 321  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||  ||||| ||||||    
T  1474 tgaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaacatgcgttacgtgagttaagt 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 24443 - 24352
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacatgcgtagcgtgacttaa 319  Q
    |||||||||||||||| ||||  ||  ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||| ||||    
T  24443 gaattctgctcattactcaaacagtatcgctcattcccaaagtaaaagtttaaaatgcccctacgcatgttaacttgcgtagcgtgagttaa 24352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 23484 - 23534
Alignment:
Q  225 tatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    ||||||||||||||||||  |||||||||  |||||||| |||||||||||    
T  23484 tatgaattctgctcattattcaaatggttttgctcattctcaaagtaaaag 23534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 483
Target Start/End: Original strand, 4710 - 4772
Alignment:
Q  420 tctctcaaattacccaactccaaaattccttcaacttcaaatcaaacaacactccaacaacaag 483  Q
    |||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  4710 tctctcaaatcacccagatccaaaattccttcaacttcaaatc-aacaacactccaataacaag 4772  T

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Target: scaffold1455 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 451 - 392
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgccc 287  Q
    ||||||| ||| ||||||||||||    ||||||||||||||||||||||||||||||||    
T  451 gaattctactctttacccaaatggaaatgctcattcccaaagtaaaagtccaaaatgccc 392  T

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Target: scaffold0246 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 2931 - 2884
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaag 275  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  2931 gaattctgctcattacccaaatggtttcgctcattctcaaaataaaag 2884  T

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Target: scaffold0163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 35771 - 35843
Alignment:
Q  223 actatgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcat 295  Q
    |||| ||||||||||| ||| |||||   ||  |||||||| ||||||||| |||||||||||||||||||||    
T  35771 actaagaattctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaatgcccctacgcat 35843  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 69722 - 69797
Alignment:
Q  228 gaattctgctcattacccaaat-ggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacat 303  Q
    ||||| ||||| |||| ||||| |||| |||||||| ||||||||||||||||||||| || ||| |||||||||||    
T  69722 gaattttgctctttactcaaattggtttcgctcattaccaaagtaaaagtccaaaatg-ccttacacatgttaacat 69797  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 8384 - 8457
Alignment:
Q  228 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 301  Q
    ||||||||||| ||||||||| | ||| ||||||| | |||||||| ||  ||||| ||| |||||||||||||    
T  8384 gaattctgctctttacccaaacgtttctgctcatttctaaagtaaatgtgtaaaatacccttacgcatgttaac 8457  T

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Target: scaffold0037 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 38373 - 38316
Alignment:
Q  231 ttctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccc 288  Q
    |||||||| |||||||||  ||| ||||||||||||||||||  ||| ||||||||||    
T  38373 ttctgctctttacccaaactgtttcgctcattcccaaagtaattgtcgaaaatgcccc 38316  T

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