View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1005_low_3 (Length: 354)
Name: NF1005_low_3
Description: NF1005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1005_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 5006120 - 5005881
Alignment:
| Q |
18 |
agatgaaccccaaggagctgtaaacaaggtctcaaactttatttcttataagttacatgtacattttacacacttgaatagctcacaataatgtctaaaa |
117 |
Q |
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| T |
5006120 |
agatgaatcccaaggagctgtaaacaaggtctcaaactttatttcttataagttacatgtacattttacacacttgaatagctgacaataatgtctaaaa |
5006021 |
T |
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| Q |
118 |
atacaagatgatatcaaagtcacgcacatagttacaatggcaaaagtagaatattgacatggacactaacatgtccataccaataatgatgatatgagaa |
217 |
Q |
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| T |
5006020 |
atacaagataatatcaaagtcacgcacatagttaaaatggcaaaagtagaacattgacatggacactaacatgtccataccaataatgatgatatgagaa |
5005921 |
T |
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| Q |
218 |
aatagaataatcgaatgtaaactatatttgtaggtgtttg |
257 |
Q |
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| T |
5005920 |
aatagaataatcgaatgtaaactatatttgtaggtgtttg |
5005881 |
T |
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