View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1005_low_4 (Length: 281)

Name: NF1005_low_4
Description: NF1005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1005_low_4
NF1005_low_4
[»] chr5 (2 HSPs)
chr5 (15-271)||(41787994-41788250)
chr5 (19-271)||(28481308-28481560)
[»] chr1 (1 HSPs)
chr1 (123-229)||(19794398-19794504)
[»] chr4 (1 HSPs)
chr4 (144-226)||(47814003-47814085)
[»] chr3 (2 HSPs)
chr3 (117-162)||(46051969-46052014)
chr3 (175-232)||(25500831-25500888)
[»] chr7 (1 HSPs)
chr7 (144-226)||(38195751-38195833)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 271
Target Start/End: Complemental strand, 41788250 - 41787994
Alignment:
Q  15 tatgatcaatggcgttttggtattggaatgtgtattcgagacactcgggaacattttatcaaagcgctaaccaaatggtttgaaggaagtccacctccaa 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41788250 tatgatcaatggcgttttggtattggaatgtgtatttgagacactcgggaacattttatcaaagcgctaaccaaatggtttgaaggaagtcaacctccaa 41788151  T
Q  115 tggaagcagaagcaattggcttgaaggaagctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtaga 214  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41788150 tggaagcataagcaattgggttgaaggaagctataatttggcttggtgagttggggttatcaaaagtgtcaattgagctggattgcaagctagtggtaga 41788051  T
Q  215 cggcattggtgatagatcggtgagtcagtctgaattcggcaatttattaagcctatg 271  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41788050 cgacattggtgatagatcggtgagtcagtctgaattcggcaatttattaagcctatg 41787994  T

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Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 28481308 - 28481560
Alignment:
Q  19 atcaatggcgttttggtattggaatgtgtattcgagacactcgggaacattttatcaaagcgctaaccaaatggtttgaaggaagtccacctccaatgga 118  Q
    |||||||||| ||||||||||||||||||||| |||||| | ||| ||||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  28481308 atcaatggcgctttggtattggaatgtgtatttgagacatttggggacattttattaaagcgctgacgaaatggtttgaaggaagtccacctccaatgga 28481407  T
Q  119 agcagaagcaattggcttgaaggaagctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggc 218  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||| ||  ||||||||||||||||||||| |    
T  28481408 agcagaagcaattgggttgaaggaaactataatttgacttggtgagttggggttatcaaaagtgtcaattgaactacattgcaagctagtggtagacgac 28481507  T
Q  219 attggtgatagatcggtgagtcagtctgaattcggcaatttattaagcctatg 271  Q
    ||||||||||| ||||||| ||||||  ||||   ||||||||||||| ||||    
T  28481508 attggtgatagctcggtgaatcagtccaaatttaacaatttattaagcatatg 28481560  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 19794504 - 19794398
Alignment:
Q  123 gaagcaattggcttgaaggaagctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattg 222  Q
    ||||||||||| ||||  |||||||| |||||||||||||   ||||  |||||| ||||| ||||||||| |||||||| |||||||| ||||||||||    
T  19794504 gaagcaattggtttgagagaagctattatttggcttggtgaactgggactatcaagagtgtcaattgagctagattgcaaactagtggtggacggcattg 19794405  T
Q  223 gtgatag 229  Q
    |||||||    
T  19794404 gtgatag 19794398  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 47814085 - 47814003
Alignment:
Q  144 gctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtga 226  Q
    ||||| ||||||||||||   |||||  | ||||||||| | |||||||| ||||||||||||||||||||  ||||||||||    
T  47814085 gctattatttggcttggtcatttgggtatgtcaaaagtgcatattgagctagattgcaagctagtggtagaaagcattggtga 47814003  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 46052014 - 46051969
Alignment:
Q  117 gaagcagaagcaattggcttgaaggaagctataatttggcttggtg 162  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||    
T  46052014 gaagcagaagcaattggtttgaaggaagccatcatttggcttggtg 46051969  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 25500831 - 25500888
Alignment:
Q  175 caaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtgatagatc 232  Q
    |||||||| | |||||||| ||||||||||||||||| ||| |||||| |||| ||||    
T  25500831 caaaagtgcatattgagctagattgcaagctagtggttgacagcattgttgatggatc 25500888  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 38195833 - 38195751
Alignment:
Q  144 gctataatttggcttggtgggttggggttatcaaaagtgtaaattgagctggattgcaagctagtggtagacggcattggtga 226  Q
    ||||| ||||||||||||   |||||  | ||||||||| | | |||||| ||||||||||||||||||||  ||||||||||    
T  38195833 gctattatttggcttggtcatttgggtatgtcaaaagtgcatactgagctagattgcaagctagtggtagaaagcattggtga 38195751  T

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