View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1005_low_5 (Length: 278)
Name: NF1005_low_5
Description: NF1005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1005_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 43561008 - 43560871
Alignment:
| Q |
1 |
caacctcacagcttagggtctatgatggttcattaaattattataggggtcctgttctgtctccaaatatctataataggtggttcaaggtgaacgttat |
100 |
Q |
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| T |
43561008 |
caacctcacagcttagggtctatgatggttcattaaattattatagggatcctgttctgtctccaaatatctataataggtggttcaaggtgaacgttat |
43560909 |
T |
|
| Q |
101 |
tcataatgtgggtggtaacaatgttaaggtttatattg |
138 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
43560908 |
tcataatgtgggtgctaacaatgttaaggtttatattg |
43560871 |
T |
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