View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1005_low_6 (Length: 270)
Name: NF1005_low_6
Description: NF1005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1005_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 4389231 - 4389489
Alignment:
| Q |
13 |
aatatggaacttgttattgataagataggaaagattgatcatgtagaggtggagaaagggttatctatggagtcggctagagttttggttcacacaaaac |
112 |
Q |
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| T |
4389231 |
aatatggaacttgttattgataagataggaaagattgatcatgtagaggtggagaaagggttatctatggagtcagctagagttttggttcacacaaaac |
4389330 |
T |
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| Q |
113 |
tcatgccattcattgaagatcgattctttatggtgtgatg-catttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaa |
211 |
Q |
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| T |
4389331 |
tcatgccattcattgaagatcgattctttatggtgtgatgccatttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaa |
4389430 |
T |
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| Q |
212 |
tgcttctgcaaaaactgttgaaccctccaagtgttatgaactagggcatgaattgggag |
270 |
Q |
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| T |
4389431 |
tgcttctgcaaaaactgttgaaccctccaagtgttatgaactagggcatgaattgggag |
4389489 |
T |
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