View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10060_high_10 (Length: 242)
Name: NF10060_high_10
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_high_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 4176333 - 4176103
Alignment:
| Q |
12 |
tcatcaggtacatttcaaaagacaagtgaaagagttccgttttcatgggagaaagaaccaggaaagccgaaagatacagagaggaatggctcgaaattac |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4176333 |
tcattaggtacatttcaaaagacaagtgaaagagttccgttttcatgggagaaagaaccaggaaagccgaaagatacagagaggaatggctcgaaattac |
4176234 |
T |
|
| Q |
112 |
caccctgccatcgtttgtttccacgaaaagaagcggctgatcaatctgatgtagaaaatggttgtgatgaagaggattatattgacaataatgacgatct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4176233 |
caccctgccatcgtttgtttccacgaaaagaagcggctgatcaatctgatgtagaaaatggttgtgatgaagaggattatattgacaataatgacgatct |
4176134 |
T |
|
| Q |
212 |
ttactcagatgctatggatgatgtgttttct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4176133 |
ttactcagatgctatggatgatgtgttttct |
4176103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University