View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_high_2 (Length: 471)
Name: NF10060_high_2
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 1425075 - 1425530
Alignment:
| Q |
1 |
gcttttaggaatattccaactcaaatattctatagataggatcatatgattgaagaattttaggaaatttcatatgtggtgatggttttctgcatcacta |
100 |
Q |
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| T |
1425075 |
gcttttaggaatattccaactcaaatattctatagataggatcatatgattgaagaattataggaaatttcatatatggtgatggttttctgcatcacta |
1425174 |
T |
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| Q |
101 |
atttcatatcttgattgtttagtggtgagtgcttaatccaaaacttatggaattcacagatgaccagaattgatggtaataccgcgtgacataatctaca |
200 |
Q |
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| T |
1425175 |
atttcatatcttgattgtttagtggtgagtgcttaatccaaaacttatggaattcacagatgaccagaattgatggtaataccgcgtgacataatctaca |
1425274 |
T |
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| Q |
201 |
ggacttcattatattagttagcctagtatttaagtgtatggtaataagtctgattagtgaaaattggtgttcatgttacggtcctcagtgtatcattatt |
300 |
Q |
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| T |
1425275 |
ggacttcattatattagttagcctagtatttaagtgtatgctaataagtctgattagtgaaaattggggttcatgttacggtcctcggtgtatcattatt |
1425374 |
T |
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| Q |
301 |
tcacattgcatagtggttgccaacgcttactttttatagatatgataatgttagttttcagggtttgaactctgaacctcgtgcttacttggtatcctac |
400 |
Q |
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| T |
1425375 |
tcacattgcatagtggttgccaacgcttactttttatagatatgataatgttagttttcagggtttgaaccctgaacctcgtgcttacttggtatcctac |
1425474 |
T |
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| Q |
401 |
tctaaacaagttattattttgcaactgaagattggttctttttagcacaggtgatg |
456 |
Q |
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| T |
1425475 |
tctaaacaagttattattttgcaactgaagattggttctttttagcacaggtgatg |
1425530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 1438081 - 1438190
Alignment:
| Q |
34 |
agataggatcatatgattgaagaattttaggaaatttcatatgtggtgatggttttctgcatcacta-att---tcatatcttgattgtttagtggtgag |
129 |
Q |
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| T |
1438081 |
agataggatcatatgattgaagaattttagtaaatttcagatatagtgatggtgttctgcatcactagattaggttgtttcttgattgttcagtggttag |
1438180 |
T |
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| Q |
130 |
tgcttaatcc |
139 |
Q |
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| T |
1438181 |
tgcttaatcc |
1438190 |
T |
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