View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_high_3 (Length: 462)
Name: NF10060_high_3
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 3884770 - 3884345
Alignment:
| Q |
20 |
ggtagttctagctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttacca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3884770 |
ggtagttctagctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttacca |
3884671 |
T |
|
| Q |
120 |
atgttgctttttgtattggttttagtcatatctttatcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3884670 |
atgttgctttttgtattggttttagtcatatctttatcagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggtg-tt |
3884572 |
T |
|
| Q |
220 |
cttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaagga |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884571 |
cttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaagga |
3884472 |
T |
|
| Q |
320 |
aggtttgtgataaaactaagtgttgaatcttgaacttaagatgaatttatgttttaagctaattattgtctgctttcaaagtacaatgtatttaagttaa |
419 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3884471 |
aggtttatgataaaactaagtgttgaatcttgaacttaagatgaatttatgttttaagctaattattgtctgcgctcaaagtacaatgtatttaagttaa |
3884372 |
T |
|
| Q |
420 |
taaacttgatattttcatggtagaaat |
446 |
Q |
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| T |
3884371 |
taaacttgatattttcatggtagaaat |
3884345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 3874241 - 3873957
Alignment:
| Q |
21 |
gtagttctagctgtggcttctcctctatacatagatcacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3874241 |
gtagttctagctgtggcttctcctctatacatagatcacagatcagagagtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaa |
3874142 |
T |
|
| Q |
121 |
tgttgctttttgtattggttttagtcatatctttatcagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttc |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3874141 |
tgttactttttgtattggttttagtcatatctttatcagcttttttggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttc |
3874042 |
T |
|
| Q |
221 |
ttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgc |
308 |
Q |
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| T |
3874041 |
ttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct---ttgtaatgtaagaaccttgcatgc |
3873957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 446
Target Start/End: Complemental strand, 3873352 - 3873272
Alignment:
| Q |
371 |
ttttaagctaattattgtctgctttcaaagtacaa-----tgtatttaagttaataaacttgatattttcatggtagaaat |
446 |
Q |
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|||||||||||||| ||||| |||| ||||||||| |||||||||| |||||||||| |||||||| |||||||||| |
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| T |
3873352 |
ttttaagctaattagtgtcttctttgaaagtacaataatgtgtatttaagctaataaacttcatattttcttggtagaaat |
3873272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 281
Target Start/End: Complemental strand, 48453561 - 48453465
Alignment:
| Q |
185 |
gtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct |
281 |
Q |
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|||||||||| | ||||||||||||||| |||| || || || |||||| || | ||| ||| | |||| |||||| |||||||||| ||| ||||| |
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| T |
48453561 |
gtttgatcgttactggattcatagagtttgtggctcctcaggcggtatttttgtgattattactgttctttttcttattttgaagtggaaatcatct |
48453465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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