View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_high_4 (Length: 393)
Name: NF10060_high_4
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_high_4 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 16021 - 16393
Alignment:
| Q |
2 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16021 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
16120 |
T |
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| Q |
102 |
taatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16121 |
taaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
16220 |
T |
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| Q |
202 |
cttcacattgagcctatgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttg |
301 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16221 |
cttcacattgagcc--tgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttg |
16318 |
T |
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| Q |
302 |
gaacgctgatgactctacaattcctctacccaatgagaataaacctttcattttagaggatattttgcaaagcct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16319 |
gaacgctgatgactctacaattcctctacccaatgagaataaacctttcgttttagaggatattttgcaaagcct |
16393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 26189 - 26561
Alignment:
| Q |
2 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26189 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
26288 |
T |
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| Q |
102 |
taatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26289 |
taaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
26388 |
T |
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| Q |
202 |
cttcacattgagcctatgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttg |
301 |
Q |
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| T |
26389 |
cttcacattgagcc--tgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttg |
26486 |
T |
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| Q |
302 |
gaacgctgatgactctacaattcctctacccaatgagaataaacctttcattttagaggatattttgcaaagcct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26487 |
gaacgctgatgactctacaattcctctacccaatgagaataaacctttcgttttagaggatattttgcaaagcct |
26561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 36355 - 36727
Alignment:
| Q |
2 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36355 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
36454 |
T |
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| Q |
102 |
taatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455 |
taaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
36554 |
T |
|
| Q |
202 |
cttcacattgagcctatgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttg |
301 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36555 |
cttcacattgagcc--tgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttg |
36652 |
T |
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| Q |
302 |
gaacgctgatgactctacaattcctctacccaatgagaataaacctttcattttagaggatattttgcaaagcct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36653 |
gaacgctgatgactctacaattcctctacccaatgagaataaacctttcgttttagaggatattttgcaaagcct |
36727 |
T |
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