View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_high_5 (Length: 381)
Name: NF10060_high_5
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 44962448 - 44962819
Alignment:
| Q |
1 |
tgtgttgtttataagggaagtctatttcaacatttttattggttagaattcgattgaatcctcatgagttttttcctttacttgaagttgaggctgacac |
100 |
Q |
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| T |
44962448 |
tgtgttgtttataagggaagtctatttcaacatttttattggttagaattcgattgaatcctcatgagttttttcctttacttgaagttgaggctgacac |
44962547 |
T |
|
| Q |
101 |
tgttccttttcagctcatgtgagcaaattaaattaactacacagaaaccaatttcattttctatgcatttaagaagaggctatctatatagtttcttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44962548 |
tgttccttttcagctcatgtgagcaaattaaattaactacacagaaaccaatttcattttctttgcatttaagaagaggctatctatatagtttcttatt |
44962647 |
T |
|
| Q |
201 |
atagaac-----nnnnnnnnnnngagaccctattctcatagaactaaactagctcataataataacaattaaattgacagttcgagtgatattatttgtg |
295 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44962648 |
atagaacttttttttttttttttgagaccctattctcatagaactaaactagctcataataataacaattaaattgacagttcgattgatattatttgtg |
44962747 |
T |
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| Q |
296 |
acatatatatgtaatggaaacaaataaggctagcaaaaatgctagctttccttgtattgaacaagacattga |
367 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44962748 |
acatatatatgtaatggaaacaaataaggctagcaaaaatgctagctttccttgtattgaacaagacattga |
44962819 |
T |
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