View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10060_low_1 (Length: 719)

Name: NF10060_low_1
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10060_low_1
NF10060_low_1
[»] chr2 (7 HSPs)
chr2 (1-704)||(38344204-38344915)
chr2 (12-149)||(38350095-38350232)
chr2 (634-704)||(38349291-38349361)
chr2 (466-531)||(11129687-11129752)
chr2 (466-560)||(28694305-28694400)
chr2 (512-563)||(35968577-35968630)
chr2 (465-506)||(11842161-11842202)
[»] chr8 (4 HSPs)
chr8 (455-564)||(34944165-34944274)
chr8 (465-563)||(40439676-40439772)
chr8 (455-538)||(373692-373777)
chr8 (464-538)||(28481874-28481948)
[»] chr3 (4 HSPs)
chr3 (465-560)||(46879326-46879421)
chr3 (469-563)||(1214694-1214788)
chr3 (465-553)||(118813-118901)
chr3 (465-559)||(52551012-52551106)
[»] chr4 (5 HSPs)
chr4 (466-559)||(42380509-42380602)
chr4 (465-553)||(31063667-31063755)
chr4 (465-506)||(42170729-42170770)
chr4 (464-537)||(42380649-42380722)
chr4 (481-541)||(52759543-52759602)
[»] chr5 (3 HSPs)
chr5 (469-563)||(41954504-41954598)
chr5 (465-563)||(35151418-35151516)
chr5 (518-559)||(592313-592354)
[»] chr1 (6 HSPs)
chr1 (455-543)||(9001741-9001829)
chr1 (470-564)||(47532311-47532405)
chr1 (457-550)||(21938073-21938166)
chr1 (223-261)||(40702655-40702693)
chr1 (502-563)||(29086457-29086518)
chr1 (465-538)||(29672477-29672550)
[»] chr6 (1 HSPs)
chr6 (465-561)||(858340-858436)
[»] chr7 (4 HSPs)
chr7 (222-261)||(10408478-10408517)
chr7 (481-540)||(31858386-31858445)
chr7 (222-257)||(39102696-39102731)
chr7 (455-540)||(33117819-33117904)


Alignment Details
Target: chr2 (Bit Score: 639; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 1 - 704
Target Start/End: Complemental strand, 38344915 - 38344204
Alignment:
Q  1 gaccgggaagtatgaaaggaacgcctaaagttatgacagaagctactttttctggatggacagcagctacaagatatgctgggatggcaccaaagtcctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344915 gaccgggaagtatgaaaggaacgcctaaagttatgacagaagctactttttctggatggacagcagctacaagatatgctgggatggcaccaaagtcctt 38344816  T
Q  101 accaataaggatagcctgatagaagtaattgaaatttcacatccaaaaactgttagacaagtttctcatcttagtctaaactccaagtccaaagtgtctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344815 accaataaggatagcctgatagaagtaattgaaatttcacatccaaaaactgttagacaagtttctcatcttagtctaaactccaagtccaaagtgtctt 38344716  T
Q  201 gttctttatcttttcttctcaaaatataagcccctatacaaattactaagtgcatttattagggacggagggagtaataaatgggaaggtcgctccagct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344715 gttctttatcttttcttctcaaaatataagcccctatacaaattactaagtgcatttattagggacggagggagtaataaatgggaaggtcgctccagct 38344616  T
Q  301 ggtgagacgtaggcacaaggaacatttaagtccattat--------ttgtaaactagacctttaatacttaaacacaacttgtaatatgtaattatttgg 392  Q
    |||||||||||||||||||||||||||||||   | |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344615 ggtgagacgtaggcacaaggaacatttaagtggttaaagtgtaatcttgtaaactagacctttaatacttaaacacaacttgtaatatgtaattatttgg 38344516  T
Q  393 aaaaagaaattttttggtgattaaatttaaaattgtctgtgaacataaaattgtatgaatatattaatgagagatatttttgtaaatcaactcacaatta 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344515 aaaaagaaattttttggtgattaaatttaaaattgtctgtgaacataaaattgtatgaatatattaatgagagatatttttgtaaatcaactcacaatta 38344416  T
Q  493 ctcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttggaatagtgcaagagtactatatacaagtgata 592  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  38344415 ctcttttctatacacaatcaactacgtttcttaatttatgtgaaattgttagaatgacatataatttggaatagtgcgagagtactatatacaagagata 38344316  T
Q  593 ctgtactagttagaaattgattgtatagaatatcttggtccttaccttgctgatacctaatgtatctaaaagatccttgacatcatcaacaaggtccatt 692  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38344315 ttgtactagttagaaattgattgtatagaatatcttggtccttacgttgctgatacctaatgtatctaaaagatccttgacatcatcaacaaggtccatt 38344216  T
Q  693 atagttgctttt 704  Q
    ||||||||||||    
T  38344215 atagttgctttt 38344204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 38350232 - 38350095
Alignment:
Q  12 atgaaaggaacgcctaaagttatgacagaagctactttttctggatggacagcagctacaagatatgctgggatggcaccaaagtccttaccaataagga 111  Q
    |||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| |||||||| ||||   ||||||||| ||||||||||||||||||    
T  38350232 atgaaaggaatgcctaaagttatgagagaagccactttttctggatagacagcaggtacaagatttgctacaatggcaccagagtccttaccaataagga 38350133  T
Q  112 tagcctgatagaagtaattgaaatttcacatccaaaaa 149  Q
     ||||||||| ||| |||| ||||| ||||||||||||    
T  38350132 aagcctgatacaagcaattaaaattgcacatccaaaaa 38350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 634 - 704
Target Start/End: Complemental strand, 38349361 - 38349291
Alignment:
Q  634 ttaccttgctgatacctaatgtatctaaaagatccttgacatcatcaacaaggtccattatagttgctttt 704  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||    
T  38349361 ttaccttgttgatacctaatgtatctaagagatccttgacttcatcaacaaggtccattatggttgatttt 38349291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 531
Target Start/End: Original strand, 11129687 - 11129752
Alignment:
Q  466 atatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctat 531  Q
    ||||||||||||| ||||||||||||||||| |||||||||  |||||||| |||| |||||||||    
T  11129687 atatttttgtaaaacaactcacaattactctcttctatacagcatcaactatattttttaatctat 11129752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 466 - 560
Target Start/End: Complemental strand, 28694400 - 28694305
Alignment:
Q  466 atatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttag---aatgacatataatttg 560  Q
    ||||||||||||| ||| ||||||| || ||||||||| || ||| ||||||||||||||||| |||| |||||| |||   ||||||||||||||||    
T  28694400 atatttttgtaaaacaattcacaat-acccttttctat-caaaataaactacatttcttaatccatgtaaaattgctagaataatgacatataatttg 28694305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 563
Target Start/End: Complemental strand, 35968630 - 35968577
Alignment:
Q  512 aactacatttcttaatctatgtgaaattgttaga--atgacatataatttggaa 563  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||||||||||    
T  35968630 aactacatttcttaatctatgtgaaattgctaaattatgacatataatttggaa 35968577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 506
Target Start/End: Original strand, 11842161 - 11842202
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctataca 506  Q
    |||| |||| |||| |||||||||||||||||||||||||||    
T  11842161 gataattttataaaacaactcacaattactcttttctataca 11842202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 455 - 564
Target Start/End: Original strand, 34944165 - 34944274
Alignment:
Q  455 attaatgagagatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatat 554  Q
    ||||||||  |||||||| |||||  |||||| ||||| |||||||||||||| || |||||||||||||||| |||||||||||| ||||||||| |||    
T  34944165 attaatgaaggatattttagtaaaataactcataattattcttttctatacaccattaactacatttcttaatatatgtgaaattgctagaatgacttat 34944264  T
Q  555 aatttggaat 564  Q
    ||||||||||    
T  34944265 aatttggaat 34944274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 465 - 563
Target Start/End: Complemental strand, 40439772 - 40439676
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttggaa 563  Q
    |||||||||||||| |||||||||||||||||||||||||||  || |||||||||||||| |||| ||||||||| |||  ||||||||| |||||||    
T  40439772 gatatttttgtaaaacaactcacaattactcttttctatacaacattaactacatttcttattctacgtgaaattgctag--tgacatatagtttggaa 40439676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 455 - 538
Target Start/End: Complemental strand, 373777 - 373692
Alignment:
Q  455 attaatgagagatatttttgtaaatcaactcacaattactct--tttctatacacaatcaactacatttcttaatctatgtgaaat 538  Q
    |||||| | |||||||||||||||  ||||||| ||||||||  |||||||||||||| |||||||||| ||||| ||||| ||||    
T  373777 attaataaaagatatttttgtaaaataactcacgattactctcttttctatacacaattaactacatttattaatttatgtaaaat 373692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 538
Target Start/End: Complemental strand, 28481948 - 28481874
Alignment:
Q  464 agatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaat 538  Q
    ||||||||||||||| ||||||| |||  |||||||| ||||| ||| || ||||||| |||||  |||||||||    
T  28481948 agatatttttgtaaaacaactcataatatctcttttccatacaaaattaattacatttattaatacatgtgaaat 28481874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 465 - 560
Target Start/End: Complemental strand, 46879421 - 46879326
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttg 560  Q
    ||||||||| |||| |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| ||| | || |||||||||||    
T  46879421 gatatttttataaagcaactcacaattactcttttctatacaacattaactacatttcttaatctatgtgaaatttttaaagtgccatataatttg 46879326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 469 - 563
Target Start/End: Complemental strand, 1214788 - 1214694
Alignment:
Q  469 tttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttggaa 563  Q
    ||||||||||  ||||||||||||||| ||||||||||  || |  | |||||||||||||||||||||||| || | | |||||||||||||||    
T  1214788 tttttgtaaaataactcacaattactcctttctatacaacattagttgcatttcttaatctatgtgaaattgctaaagttacatataatttggaa 1214694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 118813 - 118901
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacata 553  Q
    ||||||||||||||  |||||| ||||||||||||||||||| ||  || | ||||||||||| |||||||| ||  || |||||||||    
T  118813 gatatttttgtaaaataactcataattactcttttctatacaaaaataattccatttcttaatatatgtgaagttcctaaaatgacata 118901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 465 - 559
Target Start/End: Complemental strand, 52551106 - 52551012
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataattt 559  Q
    |||||||||| ||| ||| ||| ||||| ||||||||||||| ||| || |  |||| ||||| |||||||||||  ||||||||||||| ||||    
T  52551106 gatatttttgcaaaacaattcataattaatcttttctatacaaaattaattgtattttttaatatatgtgaaatttatagaatgacatattattt 52551012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 466 - 559
Target Start/End: Complemental strand, 42380602 - 42380509
Alignment:
Q  466 atatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataattt 559  Q
    ||||||||||||| ||||||| ||||||||||||| |||||  || ||||| |||| | |||||||| ||||||| ||||||||||| ||||||    
T  42380602 atatttttgtaaaacaactcataattactcttttcaatacaacattaactatatttttaaatctatgcgaaattgctagaatgacatttaattt 42380509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 553
Target Start/End: Original strand, 31063667 - 31063755
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacata 553  Q
    ||||||||||||||  |||||| |||| || |||||||| || ||| || | ||||||||||| |||||||||||  ||||||||||||    
T  31063667 gatatttttgtaaaataactcataattgcttttttctatccaaaattaattgcatttcttaatatatgtgaaattcctagaatgacata 31063755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 506
Target Start/End: Original strand, 42170729 - 42170770
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctataca 506  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  42170729 gatatttttgtaaaacaacacacaattactcttttctataca 42170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 42380722 - 42380649
Alignment:
Q  464 agatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaa 537  Q
    ||||||||||||||| ||||||| | ||  ||||||| |||||  || |||||||||||||||| |||||||||    
T  42380722 agatatttttgtaaaacaactcatagttcatcttttcaatacaacattaactacatttcttaatttatgtgaaa 42380649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 541
Target Start/End: Original strand, 52759543 - 52759602
Alignment:
Q  481 aactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgt 541  Q
    |||||| |||||||||||| |||||||| | |||||||||| ||||| |||||||||||||    
T  52759543 aactcataattactcttttgtatacacatt-aactacatttattaatttatgtgaaattgt 52759602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 469 - 563
Target Start/End: Complemental strand, 41954598 - 41954504
Alignment:
Q  469 tttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttggaa 563  Q
    ||||||||||  ||||||||||||||| ||||||||||  || |  | |||||||||||||||||||||| | || | |||||||||||||||||    
T  41954598 tttttgtaaaataactcacaattactcctttctatacaacattagttgcatttcttaatctatgtgaaatcgctaaagtgacatataatttggaa 41954504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 465 - 563
Target Start/End: Complemental strand, 35151516 - 35151418
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttggaa 563  Q
    ||||||||||||||  |||||| |||||| |||||||||| | ||| || |  |||| ||||| |||| ||| || |||||||||||||||||||||||    
T  35151516 gatatttttgtaaaataactcataattacccttttctatataaaattaattgtattttttaatatatgggaagtttttagaatgacatataatttggaa 35151418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 559
Target Start/End: Complemental strand, 592354 - 592313
Alignment:
Q  518 atttcttaatctatgtgaaattgttagaatgacatataattt 559  Q
    |||| |||||||||||| | ||||||||||||||||||||||    
T  592354 atttgttaatctatgtgcatttgttagaatgacatataattt 592313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 455 - 543
Target Start/End: Original strand, 9001741 - 9001829
Alignment:
Q  455 attaatgagagatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgtta 543  Q
    ||||||||  |||||||||||||| ||||||||||||||| ||||| |||||  || ||||| |||| ||||| ||||||||| |||||    
T  9001741 attaatgaatgatatttttgtaaaacaactcacaattacttttttcaatacaacattaactatattttttaatttatgtgaaaatgtta 9001829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 564
Target Start/End: Original strand, 47532311 - 47532405
Alignment:
Q  470 ttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttggaat 564  Q
    ||||||||| ||| | ||||||||||||||||| | |  || ||||||| || ||||| ||| |||||| |||| ||||| ||||||||||||||    
T  47532311 ttttgtaaaacaatttacaattactcttttctacataatattaactacaatttttaatttatatgaaatcgttaaaatgatatataatttggaat 47532405  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 550
Target Start/End: Original strand, 21938073 - 21938166
Alignment:
Q  457 taatgagagatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgac 550  Q
    |||||| |||||||||||||||  || ||| ||||| |||||||||||||   | || ||||||| | ||| ||||||||||| ||||||||||    
T  21938073 taatgaaagatatttttgtaaaataattcataattattcttttctatacaacgttaattacatttttcaatatatgtgaaattattagaatgac 21938166  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 40702693 - 40702655
Alignment:
Q  223 aatataagcccctatacaaattactaagtgcatttatta 261  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  40702693 aatataaacccctatacaaattactaaatgcatttatta 40702655  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 29086518 - 29086457
Alignment:
Q  502 atacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttggaa 563  Q
    ||||| ||| |||||||||||||||| ||| ||||||||| ||||  || ||||||||||||    
T  29086518 atacaaaataaactacatttcttaatttatatgaaattgtcagaaaaacttataatttggaa 29086457  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 538
Target Start/End: Original strand, 29672477 - 29672550
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaat 538  Q
    |||| ||||||||| ||||||| |||  |||||||| |||||  || || ||||||||||||| ||||||||||    
T  29672477 gataattttgtaaaacaactcataatatctcttttccatacaatattaattacatttcttaatatatgtgaaat 29672550  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 561
Target Start/End: Original strand, 858340 - 858436
Alignment:
Q  465 gatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattgttagaatgacatataatttgg 561  Q
    ||||||||||||||  |||||||||| |||||||||||||||  || || |||| || ||||| ||| | |||||| || ||| |||||||||||||    
T  858340 gatatttttgtaaaataactcacaatcactcttttctatacaacattaattacactttttaatatatataaaattgctataataacatataatttgg 858436  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 10408478 - 10408517
Alignment:
Q  222 aaatataagcccctatacaaattactaagtgcatttatta 261  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  10408478 aaatataagcccctatacaaattagtaggtgcatttatta 10408517  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 540
Target Start/End: Original strand, 31858386 - 31858445
Alignment:
Q  481 aactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattg 540  Q
    |||||| |||| ||||||||||| || ||| |||||||||| ||||| ||||||||||||    
T  31858386 aactcataatttctcttttctattcaaaattaactacatttattaatttatgtgaaattg 31858445  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 257
Target Start/End: Original strand, 39102696 - 39102731
Alignment:
Q  222 aaatataagcccctatacaaattactaagtgcattt 257  Q
    ||||||||||||||||||||||||||| ||||||||    
T  39102696 aaatataagcccctatacaaattactaggtgcattt 39102731  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 455 - 540
Target Start/End: Complemental strand, 33117904 - 33117819
Alignment:
Q  455 attaatgagagatatttttgtaaatcaactcacaattactcttttctatacacaatcaactacatttcttaatctatgtgaaattg 540  Q
    |||||| | |||||||||||||||  || | | ||||| |||||| ||||||  ||||||| ||||| ||||| ||||||||||||    
T  33117904 attaataaaagatatttttgtaaaataatttataattattcttttttatacaacatcaactgcatttattaatttatgtgaaattg 33117819  T

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