View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_low_12 (Length: 325)
Name: NF10060_low_12
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 42470349 - 42470048
Alignment:
| Q |
1 |
tggtccaatgttgaattcctcttcctggttcattatcactgcctgtaagagttcacaagataaagaattaaacaaccatccaacaatagtgtagtaggaa |
100 |
Q |
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| T |
42470349 |
tggtccaatgttgaattcctcttcctggttcattatcactgcctgtaagagttcaca---taaagaattaaacaaccatccaacaataatgtagtaggaa |
42470253 |
T |
|
| Q |
101 |
acaattgtaatgcnnnnnnnnnnnnnnnnnggtcattaaagaatgaataacatacatcttccattggcttgagaagaaaaaacaaagaagagaaaactaa |
200 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || |
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| T |
42470252 |
acaattgtaatgcaaaaaattaataaaaaagatcattaaagaatgaataacatacatcttccattggcttgagaagaaaaaacaaagcaaagaaaacaaa |
42470153 |
T |
|
| Q |
201 |
acatgttagatagctgcaaattaaatagcacttgtaatgataataacttcaatagatttctgtcatgccaacatgtgcc-ttaaggaaggcgttaagtta |
299 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42470152 |
acatgttagatagctgcaaattaaatagcactagtaatgataataacttcaatagatttctgtcatgccaacatgtgcctttaaggaaggcgttaagtta |
42470053 |
T |
|
| Q |
300 |
tctac |
304 |
Q |
| |
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||||| |
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| T |
42470052 |
tctac |
42470048 |
T |
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