View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10060_low_15 (Length: 302)

Name: NF10060_low_15
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10060_low_15
NF10060_low_15
[»] chr1 (1 HSPs)
chr1 (2-284)||(40253017-40253314)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 284
Target Start/End: Complemental strand, 40253314 - 40253017
Alignment:
Q  2 caacaacagttcatcaaattcttctgtgtgcactaaaatccgtcatgcctttgcaagcagtcctgctctccgagccattcaacgaatctcaagcttcaat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40253314 caacaacagttcatcaaattcttctgtgtgcactaaaatccgtcatgcctttgcaagcagtcctgctctccgagccattcaacgaatctcaagcttcaat 40253215  T
Q  102 caagaacacaatcatgtcactaatggttcaaattctccccctaaggctaataatgtcaaaaccaaaccac---------------atcacaaggctcaaa 186  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||    
T  40253214 caagaacacaaacatgtcaccaatggttcaaattctccccctaaggctaataatgtcaaaaccaaaccacatcaaaccaaaccacatcacaaggctcaaa 40253115  T
Q  187 cagaaacatcatcagaagtaatccctatcaagtttgattattcaacaccaacatacaaacagaatggaaactcatcagcagtttcaagtgtagcaaaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40253114 cagaaacatcatcagaagtaatccctatcaagtttgattattcaacaccaacatacaaacagaatggaaactcatcagcagtttcaagtgtagcaaaa 40253017  T

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