View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_low_2 (Length: 498)
Name: NF10060_low_2
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 25175952 - 25175471
Alignment:
| Q |
1 |
tgaactcaataaaagatcgtgtttccttggccatgttttacaatccaaagagtgatttgctaattgaacctgctaaggagcttgtgacaaaggaaaggcc |
100 |
Q |
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| T |
25175952 |
tgaactcaataaaagatcgtgtttctttggccatgttttacaatccaaagagtgatttgctaattgaacctgctaaggagcttgtgacaaaggaaaggcc |
25175853 |
T |
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| Q |
101 |
agctttgtactcagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatcattggcttcacaagtg |
200 |
Q |
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| T |
25175852 |
agctttgtactcagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatcattggcttcacaagtg |
25175753 |
T |
|
| Q |
201 |
taattagttccaataataattaatcatgtaatttgcaaatgacatgattagcatataattaaataattggatatgttgctcttgggttgggtaggtttaa |
300 |
Q |
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| T |
25175752 |
taattagttccaataataattaatcatgtaatttgcaaatgacatgattagcatataattaaataattggatatgttgctcttgggttgggtaggtttaa |
25175653 |
T |
|
| Q |
301 |
cttattatcatgtctttagtttggggttcaattgatgaaaaataaaaagaaagaattgaatcacatgtttatttcatgttttatcttctgagttattggc |
400 |
Q |
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| T |
25175652 |
cttattatcatgtctttagtttggggttcaattgatgaaaaataaaaagaaagaattgaatcacatgtttatttcatgttttatcttctgagttattggc |
25175553 |
T |
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| Q |
401 |
ttggtctattcagggnnnnnnnttcaataatggtgagtgatagggtaagcatatatgtacacctttttcccatgttactagt |
482 |
Q |
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| T |
25175552 |
ttggtctattcagggaaaaaaattcaataatggtgagtgatagggtaagcatatatgtacacctttttcccatgttactagt |
25175471 |
T |
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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 4781941 - 4782118
Alignment:
| Q |
12 |
aaagatcgtgtttccttggccatgttttacaatccaaagagtgatttgctaattgaacctgctaaggagcttgtgacaaaggaaaggccagctttgtact |
111 |
Q |
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|||||| | ||||| |||||| | ||||| ||||||| |||||||| |||||| ||||||||||||| ||| | || ||||| |||||||| | ||| |
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| T |
4781941 |
aaagatagagtttcattggccttcttttataatccaagaagtgatttactaattcaacctgctaaggaacttatcactaaggataggccagcactctacc |
4782040 |
T |
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| Q |
112 |
cagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatcattgg |
189 |
Q |
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| T |
4782041 |
caccaatgacatttgatgaatatagactttacattaggacaaaagggccttgtggaaaagctcaagtagaatctttgg |
4782118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 31789819 - 31789747
Alignment:
| Q |
112 |
cagcaatgacctatgatgaatacagactttttattaggatgaaaggaccttgtggaaagactcaagttgaatc |
184 |
Q |
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|||||||||||| |||||| |||||||| || ||||| |||| ||||||||||| || ||||||||||||| |
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| T |
31789819 |
cagcaatgacctttgatgagtacagactcttcattagaatgaggggaccttgtggcaaatctcaagttgaatc |
31789747 |
T |
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