View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_low_4 (Length: 465)
Name: NF10060_low_4
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 33878801 - 33879237
Alignment:
| Q |
18 |
acattgactgatatttcagcaacttctgggattgtaacgatgacactgttctcattcgatgttctctcgactctaagttgattttcctcggattgccacg |
117 |
Q |
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|||||||| |||||||| |||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878801 |
acattgacagatatttctgcaacttccgggattgtgaccatgacaccgttctcattcgatgttctctcgactctaagttgattttcctcggattgccacg |
33878900 |
T |
|
| Q |
118 |
tagagaggtgaccttcagggatcacgagatcctttccatcataagagagcttcaaatggtcaacttcgtcatcccaaattgatgatggtgtggcttcaat |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33878901 |
tagagaggtgaccttcagggatcacaagatcctttccatcataagagagcttcaaatggtcaacttcgtcatcccaaattgatgatggtgtggcttcaat |
33879000 |
T |
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| Q |
218 |
agaaaagttgtgtgaatcaaataggactcccaatgcttgaatccaagtataatcccttggtctcccttgcggcctaaggccgataaaacgagcattgatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879001 |
agaaaagttgtgtgaatcaaataggactcccaatgcttgaatccaagtataatcccttggtctcccttgcggcctaaggccgataaaacgagcattgatt |
33879100 |
T |
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| Q |
318 |
tgaaggttggtgtcagataccaagctgaaatgctcattcctccttccatggaagtagaaaacaatgccatccgcaccaacaaaccgggggtccaaacatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879101 |
tgaaggttggtgtcagataccaagctgaaatgctcattcctccttccatggaagtagaaaacaatgccatccgcaccaacaaaccgggggtccaaacatg |
33879200 |
T |
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| Q |
418 |
cagatccgcgaccattacaatttgctttacggcctat |
454 |
Q |
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| T |
33879201 |
cagatccgcgaccattacaatttgctttacggcctat |
33879237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 33874556 - 33874986
Alignment:
| Q |
18 |
acattgactgatatttcagcaacttctgggattgtaacgatgacactgttctcattcgatgttctctcgactctaagttgattttcctcggattgccacg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33874556 |
acattgactgatatttcagcaacttctgggattgtaacgatgacactgttctcattcgatgttctctcgactctaagttgattttcctcggattgccatg |
33874655 |
T |
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| Q |
118 |
tagagaggtgaccttcagggatcacgagatcctttccatcataagagagcttcaaatggtcaacttcgtcatcccaaattgatgatggtgtggcttcaat |
217 |
Q |
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|||||||||||||| | ||||| ||||| |||||||| ||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33874656 |
tagagaggtgacctcctgggattacgagttcctttccgtcataggagagtttcagatggtcaacttcgtcatcccaacttgatgatggtgtggcttcaat |
33874755 |
T |
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| Q |
218 |
agaaaagttgtgtgaatcaaataggactcccaatgcttgaatccaagtataatcccttggtctcccttgcggcctaaggccgataaaacgagcattgatt |
317 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
33874756 |
agaaaagttgtgtgaatcaaagaggactcccaatgcttgaatccaagtataatcccttggtctccgctgcggcctaagaccgataaaacgagcattgatt |
33874855 |
T |
|
| Q |
318 |
tgaaggttggtgtcagataccaagctgaaatgctcattcctccttccatggaagtagaaaacaatgccatccgcaccaacaaaccgggggtccaaacatg |
417 |
Q |
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|||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |
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| T |
33874856 |
tgaaggttcacgtcagatactaagctgaagtgctcattcctccttccatggaagtagaaaacaatgccatccgcaccaacgaaccgagggtccaagcatg |
33874955 |
T |
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| Q |
418 |
cagatccgcgaccattacaatttgctttacg |
448 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
33874956 |
cagatccgcgaccattacaatttggtttacg |
33874986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 225 - 433
Target Start/End: Original strand, 22718591 - 22718799
Alignment:
| Q |
225 |
ttgtgtgaatcaaataggactcccaatgcttgaatccaagtataatcccttggtctcccttgcggcctaaggccgataaaacgagcattgatttgaaggt |
324 |
Q |
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|||||||| ||||| || | ||| | |||||||||||| |||||||| |||| ||| |||| || || ||||| || ||||| ||||||||||||| | |
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| T |
22718591 |
ttgtgtgattcaaagagaattccaagtgcttgaatccatgtataatctcttgttctaccttcaggtcttaggccaatgaaacgtgcattgatttgaacat |
22718690 |
T |
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| Q |
325 |
tggtgtcagataccaagctgaaatgctcattcctccttccatggaagtagaaaacaatgccatccgcaccaacaaaccgggggtccaaacatgcagatcc |
424 |
Q |
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| | |||||||| ||| ||||||| ||||| |||||||| ||||||||||| || ||||| || |||||||| || || ||||| ||||| ||||| |
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| T |
22718691 |
ttggatcagatactaaggtgaaatgttcattggatcttccatgaaagtagaaaactattccatctgctccaacaaagcgaggatccaagcatgctgatcc |
22718790 |
T |
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| Q |
425 |
gcgaccatt |
433 |
Q |
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|| ||||| |
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| T |
22718791 |
acggccatt |
22718799 |
T |
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