View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_low_6 (Length: 454)
Name: NF10060_low_6
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 26622184 - 26621742
Alignment:
| Q |
13 |
ccaacttcaaatagacatgatctattttttaggcgaagttctataagcaataaagatagaagtagaacgaaaggtatgactacgtgtctttttcaatcan |
112 |
Q |
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| T |
26622184 |
ccaacttcaaatagacatgatttattttttaggcgaagttctataagcaataaagatagaagtagaacgaaaggtatgactacgtgtctttttcaatcat |
26622085 |
T |
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| Q |
113 |
nnnnnnnataaactagctatgtttagttttacactgattatcattgatgtaacatacgccaatggtttaagat-gtgaaatagaatagagataataccat |
211 |
Q |
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| T |
26622084 |
tttttttataaactagctatgtttagttttacagtgattatcattgatgtaacatacgccaatggtttaagattgtgaaatagaatagagatgataccat |
26621985 |
T |
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| Q |
212 |
ggaaacttcaggggagatggaatttgttagcagcaggatcagaccctcaacatcctaataatgttattgtggtaactagcgatagatgattcattgcttt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26621984 |
ggaaacttcaggggagatggaatttgttagcagcaggatcagaccctcaacatcctaataatgttattgtggtaactggcgatagatgattcattgcttt |
26621885 |
T |
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| Q |
312 |
gtcttttgtctttaattgaatatactgtacttgctactgaatcgttgatatttatagtttttataaatttgaatttagtcctatatgcaaattgttagag |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621884 |
gtcttttgtctttaattgaatatactgtacttgctaccgaattgttgatatttatagtttttataaatttgaatttagtcctatatgcaaattgttagag |
26621785 |
T |
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| Q |
412 |
attaattcgttagggagatggcgatttattagtagaagatatt |
454 |
Q |
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| T |
26621784 |
attaattcgttagggagatggcgatttattagtagaagatatt |
26621742 |
T |
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