View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10060_low_7 (Length: 454)
Name: NF10060_low_7
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10060_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 26621735 - 26621294
Alignment:
| Q |
1 |
tatacctccttcataaaatatattagtgtctcaactcttgtcactaggcctctccttcgatgacaaagttggtcattgttaaacaatttggaattagaag |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621735 |
tatacttccttcataaaatatattagtgtctcaactcttgtcactaggcctctccttcgatgacaaagttggtcattgttaaacaatttggaattagaag |
26621636 |
T |
|
| Q |
101 |
cagcatagagatgccttgtaatacaagccacttgtgctagttagcatcttggctcaaccataggcttgttatgggcattagcatagagtagcataacttt |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26621635 |
cagcatagagatgccttgtaatacaagctacttgtgctagttagcatcttggctcaaccataggcttgttatgagcattagcatagagtagcataacttt |
26621536 |
T |
|
| Q |
201 |
atattttctattgtgttcactcggcattcagcaaggttatcagaagttagtttcatagattagttagagtttgttagactcgagctataaatatctcctt |
300 |
Q |
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|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621535 |
atcttttctattgtgttgactcgacattcagcaaggttatcagaagttagtttcatagattagttagagtttgttagactcgagctataaatatctcctt |
26621436 |
T |
|
| Q |
301 |
gatcttcagtgtgagttactgcctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaactttcagaagaacttgaatcttacctt |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621435 |
gatcttcagtgtgagttactacctcaatcaaggatctagatttgtttttaaattttttactgctctcgataaactttcagaagaacttgaatcttacctt |
26621336 |
T |
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| Q |
401 |
cttacacttgtttgtggatgtccaatgtgtagtgtctgtgct |
442 |
Q |
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|||||||| ||||||||||||||||||||||| || |||||| |
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| T |
26621335 |
cttacactagtttgtggatgtccaatgtgtagcgtttgtgct |
26621294 |
T |
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