View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10060_low_8 (Length: 432)

Name: NF10060_low_8
Description: NF10060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10060_low_8
NF10060_low_8
[»] chr4 (1 HSPs)
chr4 (130-204)||(23995617-23995690)
[»] chr5 (4 HSPs)
chr5 (137-204)||(33285324-33285391)
chr5 (150-204)||(33313514-33313568)
chr5 (352-417)||(33313299-33313364)
chr5 (360-414)||(33303817-33303871)
[»] chr3 (1 HSPs)
chr3 (75-120)||(12702040-12702085)
[»] scaffold0104 (1 HSPs)
scaffold0104 (49-86)||(12232-12269)
[»] scaffold0001 (1 HSPs)
scaffold0001 (49-122)||(5981-6054)
[»] chr6 (2 HSPs)
chr6 (83-120)||(1627355-1627392)
chr6 (52-114)||(21962570-21962632)
[»] scaffold1796 (1 HSPs)
scaffold1796 (52-122)||(106-176)
[»] scaffold0815 (1 HSPs)
scaffold0815 (52-114)||(4001-4063)
[»] scaffold0029 (1 HSPs)
scaffold0029 (75-105)||(37032-37062)
[»] chr8 (1 HSPs)
chr8 (75-105)||(14890892-14890922)
[»] chr7 (2 HSPs)
chr7 (74-120)||(23444749-23444795)
chr7 (72-120)||(4850543-4850590)
[»] chr1 (4 HSPs)
chr1 (52-114)||(6196894-6196956)
chr1 (52-114)||(6204745-6204807)
chr1 (52-122)||(16885844-16885914)
chr1 (72-120)||(25925525-25925572)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 23995690 - 23995617
Alignment:
Q  130 tgtcccttaagcccatttcaaaataccagcaaggcccagttgcctttttctgctgcttctttgcactacttcctg 204  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  23995690 tgtcccttaagcccatttcaaaat-ccagcaaggcccagctgcctttttctgctgcttctttccactacttcctg 23995617  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 33285324 - 33285391
Alignment:
Q  137 taagcccatttcaaaataccagcaaggcccagttgcctttttctgctgcttctttgcactacttcctg 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||    
T  33285324 taagcccatttcaaaataccagcaaggcccagctgcctttttcttctgcttctttccactacttcctg 33285391  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 33313568 - 33313514
Alignment:
Q  150 aaataccagcaaggcccagttgcctttttctgctgcttctttgcactacttcctg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33313568 aaataccagcaaggcccagttgcctttttctgctgcttctttgcactacttcctg 33313514  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 352 - 417
Target Start/End: Complemental strand, 33313364 - 33313299
Alignment:
Q  352 gattgtatagtagactttaatgtaattcatacatttttatcattttacatcttaggtttatttctg 417  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  33313364 gattgtatagtaggctttaatgtaattcatgcatttttatcattttacgtcttaggtttatttctg 33313299  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 33303817 - 33303871
Alignment:
Q  360 agtagactttaatgtaattcatacatttttatcattttacatcttaggtttattt 414  Q
    ||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  33303817 agtaggctttaatgtaattcatgcatttatatcattttacgtcttaggtttattt 33303871  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 12702040 - 12702085
Alignment:
Q  75 aaccggttcggttctcctggacccgacccaggcctgaaccaaaccg 120  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||    
T  12702040 aaccggttcggttctcctggacccgacccagacctgaaccgaaccg 12702085  T

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Target: scaffold0104 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 12269 - 12232
Alignment:
Q  49 ggtttacaccctttatatattctctgaaccggttcggt 86  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  12269 ggtttacaccctttatatattctctgagccggttcggt 12232  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 5981 - 6054
Alignment:
Q  49 ggtttacaccctttatatattctctgaaccggttcggttctcctggacccgacccaggcctgaaccaaaccgaa 122  Q
    ||||||||||||||||||||||||||| |||||||| ||||  |  |||||||||| | |||| || |||||||    
T  5981 ggtttacaccctttatatattctctgagccggttcgattcttttaaacccgacccaagtctgagccgaaccgaa 6054  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 1627355 - 1627392
Alignment:
Q  83 cggttctcctggacccgacccaggcctgaaccaaaccg 120  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1627355 cggttctcctggacccaacccaggcctgaaccaaaccg 1627392  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 21962570 - 21962632
Alignment:
Q  52 ttacaccctttatatattctctgaaccggttcggttctcctggacccgacccaggcctgaacc 114  Q
    ||||||||||||||||||| |||| |||||||||| ||  || |||||||||| | |||||||    
T  21962570 ttacaccctttatatattccctgagccggttcggtccttttgaacccgacccaagtctgaacc 21962632  T

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Target: scaffold1796 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1796
Description:

Target: scaffold1796; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 106 - 176
Alignment:
Q  52 ttacaccctttatatattctctgaaccggttcggttctcctggacccgacccaggcctgaaccaaaccgaa 122  Q
    ||||||||||||||||||  |||| |||||||||||||  || ||||| |||| | ||||||| |||||||    
T  106 ttacaccctttatatatttcctgagccggttcggttcttttgaacccggcccaagtctgaaccgaaccgaa 176  T

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Target: scaffold0815 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 4063 - 4001
Alignment:
Q  52 ttacaccctttatatattctctgaaccggttcggttctcctggacccgacccaggcctgaacc 114  Q
    ||||||||||||||||||| |||| |||||||||| ||  || |||||||||| | |||||||    
T  4063 ttacaccctttatatattccctgagccggttcggtccttttgaacccgacccaagtctgaacc 4001  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 37062 - 37032
Alignment:
Q  75 aaccggttcggttctcctggacccgacccag 105  Q
    |||||||||||||||||||||||||||||||    
T  37062 aaccggttcggttctcctggacccgacccag 37032  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 14890922 - 14890892
Alignment:
Q  75 aaccggttcggttctcctggacccgacccag 105  Q
    |||||||||||||||||||||||||||||||    
T  14890922 aaccggttcggttctcctggacccgacccag 14890892  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 23444749 - 23444795
Alignment:
Q  74 gaaccggttcggttctcctggacccgacccaggcctgaaccaaaccg 120  Q
    ||||||||||| ||||||||||||||| |||||| |||||| |||||    
T  23444749 gaaccggttcgtttctcctggacccgaaccaggcttgaaccgaaccg 23444795  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 4850543 - 4850590
Alignment:
Q  72 ctgaaccggttcggttctcctggacccgacccaggcctgaaccaaaccg 120  Q
    ||||||||||||||||||||| || |||| |||||| ||||||||||||    
T  4850543 ctgaaccggttcggttctcct-gaaccgaaccaggcttgaaccaaaccg 4850590  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 6196956 - 6196894
Alignment:
Q  52 ttacaccctttatatattctctgaaccggttcggttctcctggacccgacccaggcctgaacc 114  Q
    ||||||||||||||||||| |||| |||||||||| ||  || |||||||||| | |||||||    
T  6196956 ttacaccctttatatattccctgagccggttcggtccttttgaacccgacccaagtctgaacc 6196894  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 6204807 - 6204745
Alignment:
Q  52 ttacaccctttatatattctctgaaccggttcggttctcctggacccgacccaggcctgaacc 114  Q
    ||||||||||||||||||| |||| |||||||||| ||  || |||||||||| | |||||||    
T  6204807 ttacaccctttatatattccctgagccggttcggtccttttgaacccgacccaagtctgaacc 6204745  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 16885844 - 16885914
Alignment:
Q  52 ttacaccctttatatattctctgaaccggttcggttctcctggacccgacccaggcctgaaccaaaccgaa 122  Q
    ||||||||||||||||||| |||| |||||||||||||  || | ||| |||| | ||||||| |||||||    
T  16885844 ttacaccctttatatattccctgagccggttcggttcttttgaatccggcccaagtctgaaccgaaccgaa 16885914  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 25925572 - 25925525
Alignment:
Q  72 ctgaaccggttcggttctcctggacccgacccaggcctgaaccaaaccg 120  Q
    |||||||||||||||||||||||| |||| |||||| |||||| |||||    
T  25925572 ctgaaccggttcggttctcctgga-ccgaaccaggcttgaaccgaaccg 25925525  T

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