View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10061_low_1 (Length: 498)
Name: NF10061_low_1
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Original strand, 42349003 - 42349448
Alignment:
| Q |
14 |
gacatcaaacacaaaccactaccaaaccatcattaaggtttctcctttttaaaatatttcctctagtcataagtcttccaagaaatagttgtcaagcgat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42349003 |
gacatcaaacacaaaccactaccaaaccatcattaaggattctccttttttaaatatttcctcttgtcataagtcttccaagaaatagttgtcaagcgat |
42349102 |
T |
|
| Q |
114 |
agtttaaactataggtgaatcaaaactcttccaattagctttcaaaccctttcgagttgtcacggttaaaatatactcttgtaagaactttttgtcaaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
42349103 |
agtttaaactataggtgaatcaaaactctttcaattagctttcaaacccttttaagttgtcgaagttaaaatatacttttgtaagaactttttatcaaga |
42349202 |
T |
|
| Q |
214 |
tacatatataccaaattaatcggaaaaactctgaaatagtcaagcacccaaacccaat-ggtcatcttcaaggccaattaaagacccc-tcaatgcggcc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||| ||||||| ||| |
|
|
| T |
42349203 |
tacatatataccaaattaatcggaaaaactctgaaatagtcaagcacccaaacccaatgggtcatcttcagggtcaattaaaaaccccgtcaatgcagcc |
42349302 |
T |
|
| Q |
312 |
ccatagctcttggaataaata-ttttttcccatttaaagaaattctcccaccacttgaaatcccaactcgacgtcctttcccccacggatcacatctcac |
410 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
42349303 |
ccataactcttggaataaatatttttttctcatttaaagaaattcttccaccacttgaaatcccaactcgatgacctttcccccacggatcacatctcac |
42349402 |
T |
|
| Q |
411 |
taatgctacaatattttcagacagacaaggaaaataacattggaaa |
456 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
42349403 |
taatgctacaagattttcggacagacaaggaaaataatattggaaa |
42349448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University