View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10061_low_10 (Length: 302)

Name: NF10061_low_10
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10061_low_10
NF10061_low_10
[»] chr7 (5 HSPs)
chr7 (1-285)||(18660198-18660481)
chr7 (9-101)||(21126739-21126831)
chr7 (227-285)||(21113076-21113134)
chr7 (232-285)||(21132036-21132089)
chr7 (124-164)||(30531570-30531610)
[»] chr4 (5 HSPs)
chr4 (227-285)||(39130642-39130700)
chr4 (124-164)||(25669824-25669864)
chr4 (124-164)||(27117208-27117248)
chr4 (124-156)||(28232093-28232125)
chr4 (124-164)||(32973156-32973196)
[»] chr3 (2 HSPs)
chr3 (124-163)||(48505083-48505122)
chr3 (124-163)||(45941117-45941156)
[»] chr2 (5 HSPs)
chr2 (122-163)||(4379288-4379329)
chr2 (124-157)||(11967112-11967145)
chr2 (122-155)||(43402635-43402668)
chr2 (124-164)||(26005819-26005859)
chr2 (124-164)||(33145649-33145689)
[»] chr6 (1 HSPs)
chr6 (134-164)||(20864672-20864702)
[»] chr1 (1 HSPs)
chr1 (124-164)||(43491365-43491405)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 18660481 - 18660198
Alignment:
Q  1 ctttttatctatcatatcatcggtataaagttctcatcctcgtgtagccattactaatgtcaattggaaaataggttgaacacataggatagattttact 100  Q
    |||| |||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  18660481 ctttctatctatcatattattggtataaagttttcatcctcgtgtagtcattactaatgtcaattggaaaatacgttgaacacataagatagattttact 18660382  T
Q  101 caatataaaaactgatatcctgattttgtaagaatgagttagacccaatataaaaacttaatatcgagctatcaataataaatgttatcattctagctat 200  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  18660381 caatataaaaactgatatcataattttgtaagaatgagttagacc-aatataaaaacttaatatctggctatcaataataaatgttatcattctagctat 18660283  T
Q  201 atgatttcctgatcttctacgtctattttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgct 285  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18660282 atgatttcctgatcttcttcgtctattttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgct 18660198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 21126831 - 21126739
Alignment:
Q  9 ctatcatatcatcggtataaagttctcatcctcgtgtagccattactaatgtcaattggaaaataggttgaacacataggatagattttactc 101  Q
    |||||||||||||||||||||||| |||||||||| || |||||||||| ||||||||||||||| |||||||||||| |||| |||||||||    
T  21126831 ctatcatatcatcggtataaagttttcatcctcgtctaaccattactaacgtcaattggaaaatacgttgaacacataagatatattttactc 21126739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 21113134 - 21113076
Alignment:
Q  227 tttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgct 285  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  21113134 tttccgacaggtaaaaactcaaagcttttcctcttaaacacaggtaacatcatcttgct 21113076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 21132089 - 21132036
Alignment:
Q  232 aacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgct 285  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||    
T  21132089 aacaggtaagctctcaaagcttttcctcttaaacaatggtaacatcctcttgct 21132036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 30531610 - 30531570
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaatat 164  Q
    ||||||||| |||| ||||||||||||||||||| ||||||    
T  30531610 ttttgtaaggatgacttagacccaatataaaaacctaatat 30531570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 39130642 - 39130700
Alignment:
Q  227 tttccaacaggtaagcactcaaagcttttcctcttaaacacaggtaacatcctcttgct 285  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||    
T  39130642 tttcaaacaggtaagctctcaaagctttccctcttaaacacaggtaatatccttttgct 39130700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 25669824 - 25669864
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaatat 164  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  25669824 ttttgtaagaatgagttaggccctatataaaaacttaatat 25669864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 27117248 - 27117208
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaatat 164  Q
    ||||||||| |||||||||||||| ||||||||| ||||||    
T  27117248 ttttgtaaggatgagttagacccattataaaaacctaatat 27117208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 28232125 - 28232093
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaa 156  Q
    ||||||||| |||||||||||||||||||||||    
T  28232125 ttttgtaaggatgagttagacccaatataaaaa 28232093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 32973156 - 32973196
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaatat 164  Q
    ||||||||| |||||||||||| ||||||||||| ||||||    
T  32973156 ttttgtaaggatgagttagaccaaatataaaaacctaatat 32973196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 48505083 - 48505122
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaata 163  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  48505083 ttttgtaaggatgagttagacccaatataaaaacttaata 48505122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 45941156 - 45941117
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaata 163  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  45941156 ttttgtaaggatgagttagacccaatctaaaaacttaata 45941117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 4379288 - 4379329
Alignment:
Q  122 gattttgtaagaatgagttagacccaatataaaaacttaata 163  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  4379288 gattttgtaagaatgagttaaacccaatatacaaacttaata 4379329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 11967145 - 11967112
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaac 157  Q
    ||||||||||||||||||||||||||||||||||    
T  11967145 ttttgtaagaatgagttagacccaatataaaaac 11967112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 43402635 - 43402668
Alignment:
Q  122 gattttgtaagaatgagttagacccaatataaaa 155  Q
    |||||||||||||||| |||||||||||||||||    
T  43402635 gattttgtaagaatgaattagacccaatataaaa 43402668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 26005819 - 26005859
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaatat 164  Q
    ||||||||| |||||| |||||||| |||||||||||||||    
T  26005819 ttttgtaaggatgagtaagacccaacataaaaacttaatat 26005859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 33145689 - 33145649
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaatat 164  Q
    ||||||||||||||||||| | |||||||||||| ||||||    
T  33145689 ttttgtaagaatgagttaggctcaatataaaaacctaatat 33145649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 20864702 - 20864672
Alignment:
Q  134 atgagttagacccaatataaaaacttaatat 164  Q
    |||||||||||||||||||||||||||||||    
T  20864702 atgagttagacccaatataaaaacttaatat 20864672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 43491405 - 43491365
Alignment:
Q  124 ttttgtaagaatgagttagacccaatataaaaacttaatat 164  Q
    |||| |||| |||||||||||||||||||||||| ||||||    
T  43491405 ttttttaaggatgagttagacccaatataaaaacctaatat 43491365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University