View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10061_low_11 (Length: 284)
Name: NF10061_low_11
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 19296878 - 19296664
Alignment:
| Q |
7 |
aaaggatctctcttgcatatcagttccaccatttttccttctcattggccactcaaacttggcgagtttaccttttccttatcttcatataaggttttga |
106 |
Q |
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| T |
19296878 |
aaaggatctctcttgcctatcagttcta---tttttccttctcattggccactcaaacttggtgagtttaccttttccttatcttcatataaggttttga |
19296782 |
T |
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| Q |
107 |
atttgattttctaatgtgagggagagattgagcaccaaattaggtttctgtttattcatttctagttttaatttccgaccatgttggattttggttcctt |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19296781 |
atttggttttctaatgtgagggagagattgagcaccaaattggatttctgtttattcatttctagttttaatttccgaccttgttggattttggttcctt |
19296682 |
T |
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| Q |
207 |
gtagtttcttattttaga |
224 |
Q |
| |
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||||||||||||| |||| |
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| T |
19296681 |
gtagtttcttattataga |
19296664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 54309344 - 54309515
Alignment:
| Q |
70 |
gagtttaccttttccttatcttcatataaggttttgaatttgattttctaatgtgagggagagattgagcaccaaattaggtttctgtttattcatttct |
169 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||| |||| ||||||| |
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| T |
54309344 |
gagtttaccttttccttatcttcatatatggttttgaatttggttttataatgtgagggagagatcgagcaccaaattgggtttccttttacccatttct |
54309443 |
T |
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| Q |
170 |
agttttaatttccgaccatgttggattttggttccttgtag-tttcttattttagattcttttttgcctttg |
240 |
Q |
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| T |
54309444 |
agttttaatttctgactatgttggtttttggttccttgtagttttattgatttagattcatttttgcctttg |
54309515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 31109643 - 31109772
Alignment:
| Q |
54 |
gccactcaaacttggcgagtttaccttttccttatcttcatataaggttttgaatttgattttctaatgtgagggagagattgagcaccaaattaggttt |
153 |
Q |
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|||||||| ||| || ||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||| |
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| T |
31109643 |
gccactcagactcggtgagtttagcttttccttatcttcaaatatggttttgaatttgggtttctaatgtgaaggagagattgagcgccaaattgggttt |
31109742 |
T |
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| Q |
154 |
ctgtttattcatttctagttttaatttccg |
183 |
Q |
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| T |
31109743 |
ccttttatccctttttagttttaatttccg |
31109772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 31116326 - 31116197
Alignment:
| Q |
54 |
gccactcaaacttggcgagtttaccttttccttatcttcatataaggttttgaatttgattttctaatgtgagggagagattgagcaccaaattaggttt |
153 |
Q |
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|||||||| ||| || ||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||| ||||||| ||||| |
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| T |
31116326 |
gccactcagactcggtgagtttagcttttccttatcttcaaatatggttttgaatttgggtttctaatgtgaaggagagattgagcgccaaattgggttt |
31116227 |
T |
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| Q |
154 |
ctgtttattcatttctagttttaatttccg |
183 |
Q |
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| ||||| | ||| ||||||||||||||| |
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| T |
31116226 |
ccttttatccctttttagttttaatttccg |
31116197 |
T |
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