View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10061_low_12 (Length: 261)
Name: NF10061_low_12
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 9090925 - 9090694
Alignment:
| Q |
11 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaa |
110 |
Q |
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| T |
9090925 |
cagagagaagttcgcaatagataacactacgtgcagttctatatgcatgcacatacttatttggtgaggataggaaatcttctcagttggttttgtaaaa |
9090826 |
T |
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| Q |
111 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
210 |
Q |
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| T |
9090825 |
tcagcaacattggcaacggtgataccccacttaaatgcaggtgcccaaaagtgaactgcacaacaaaagtggtcaattaatggattgatacaggtttgac |
9090726 |
T |
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| Q |
211 |
aataacaatgctaacacttgacaacaacactg |
242 |
Q |
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| T |
9090725 |
aataacaatgctaacacttgacaacaacactg |
9090694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 9095229 - 9095094
Alignment:
| Q |
53 |
atgcatgcacatacttatttgatgaggataggaaatcttctcagttggttttgtaaaatcagcaacattggcaacggtgataccccacttaaatgcaggt |
152 |
Q |
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| T |
9095229 |
atgcatgcgcatacctatttgttgaggataggaaagcttctcaggtggttttgcaaaatcagcaatattggcaatgctgataccccacttaaatgtaggg |
9095130 |
T |
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| Q |
153 |
gcccaaaagtgaactgcacaacaaaagtggtcaatt |
188 |
Q |
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| T |
9095129 |
gcccaaaagtgaactgcacaaaataagtggtcaatt |
9095094 |
T |
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