View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10061_low_13 (Length: 257)
Name: NF10061_low_13
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 17734650 - 17734406
Alignment:
| Q |
1 |
acaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
17734650 |
acaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggcagtgatca |
17734551 |
T |
|
| Q |
101 |
taatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17734550 |
taatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagagaaacgtt |
17734451 |
T |
|
| Q |
201 |
ggtgaggttggtcagtgattttccgatgagattctgctctgatgt |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17734450 |
ggtgaggtttgtcagtgattttccgatgagattctgctctgatgt |
17734406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 17743890 - 17743656
Alignment:
| Q |
1 |
acaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatca |
100 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
17743890 |
acaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatca |
17743791 |
T |
|
| Q |
101 |
taatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17743790 |
taatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgttcagagaaacgtt |
17743691 |
T |
|
| Q |
201 |
ggtgaggttggtcagtgattttccgatgagattct |
235 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| |
|
|
| T |
17743690 |
ggtgaatttggtgagtgattttccgatgagattct |
17743656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 16720666 - 16720430
Alignment:
| Q |
1 |
acaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||||||||| |||| |
|
|
| T |
16720666 |
acaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatca |
16720567 |
T |
|
| Q |
101 |
taatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgtt |
200 |
Q |
| |
|
|| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||| |||| ||| |
|
|
| T |
16720566 |
tactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaatgtt |
16720467 |
T |
|
| Q |
201 |
ggtgaggttggtcagtgattttccgatgagattctgc |
237 |
Q |
| |
|
||| ||||| || | |||||||||||||||||||||| |
|
|
| T |
16720466 |
ggttaggtttgtaaatgattttccgatgagattctgc |
16720430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 17697680 - 17697444
Alignment:
| Q |
1 |
acaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||||||||| |||| |
|
|
| T |
17697680 |
acaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatca |
17697581 |
T |
|
| Q |
101 |
taatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgtt |
200 |
Q |
| |
|
|| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||||| |||| ||| |
|
|
| T |
17697580 |
tactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaatgtt |
17697481 |
T |
|
| Q |
201 |
ggtgaggttggtcagtgattttccgatgagattctgc |
237 |
Q |
| |
|
||| ||||| || | |||||||||||||||||||||| |
|
|
| T |
17697480 |
ggttaggtttgtaaatgattttccgatgagattctgc |
17697444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 17716592 - 17716363
Alignment:
| Q |
8 |
gagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgag |
107 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||| |||||||||||| |||||||||| ||||| | |||||||||||||||||||| ||||||| |||| |
|
|
| T |
17716592 |
gagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggagccggtagcgatcatactgag |
17716493 |
T |
|
| Q |
108 |
tacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgagg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
17716492 |
cacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttagg |
17716393 |
T |
|
| Q |
208 |
ttggtcagtgattttccgatgagattctgc |
237 |
Q |
| |
|
|| || |||||||||| ||||||||||||| |
|
|
| T |
17716392 |
tttgtgagtgattttctgatgagattctgc |
17716363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 16729532 - 16729303
Alignment:
| Q |
8 |
gagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgag |
107 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| ||||| ||||||| |||| |
|
|
| T |
16729532 |
gagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgag |
16729433 |
T |
|
| Q |
108 |
tacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
16729432 |
cacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttagg |
16729333 |
T |
|
| Q |
208 |
ttggtcagtgattttccgatgagattctgc |
237 |
Q |
| |
|
|| || |||||||||| ||||||||||||| |
|
|
| T |
16729332 |
tttgtgagtgattttctgatgagattctgc |
16729303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 17706604 - 17706375
Alignment:
| Q |
8 |
gagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgag |
107 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| | |||||||| ||||| ||||| ||||||| |||| |
|
|
| T |
17706604 |
gagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgag |
17706505 |
T |
|
| Q |
108 |
tacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttggtgatgttcagagaaacgttggtgagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
17706504 |
cacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttagg |
17706405 |
T |
|
| Q |
208 |
ttggtcagtgattttccgatgagattctgc |
237 |
Q |
| |
|
|| || |||||||||| ||||||||||||| |
|
|
| T |
17706404 |
tttgtgagtgattttctgatgagattctgc |
17706375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University