View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10061_low_2 (Length: 478)

Name: NF10061_low_2
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10061_low_2
NF10061_low_2
[»] chr2 (14 HSPs)
chr2 (153-460)||(30866655-30866956)
chr2 (187-445)||(12158489-12158748)
chr2 (22-148)||(6204511-6204637)
chr2 (52-152)||(33361751-33361851)
chr2 (53-152)||(16871513-16871611)
chr2 (79-153)||(20268121-20268195)
chr2 (79-152)||(20268028-20268101)
chr2 (52-153)||(34229043-34229144)
chr2 (52-152)||(39063805-39063905)
chr2 (53-139)||(10148583-10148669)
chr2 (72-139)||(10147799-10147866)
chr2 (17-152)||(31139548-31139683)
chr2 (86-152)||(9375273-9375339)
chr2 (72-152)||(41983254-41983334)
[»] chr1 (8 HSPs)
chr1 (153-460)||(23599643-23599951)
chr1 (153-457)||(4815410-4815715)
chr1 (206-430)||(13392579-13392804)
chr1 (159-427)||(10068492-10068760)
chr1 (79-153)||(18526899-18526973)
chr1 (17-154)||(21071213-21071349)
chr1 (79-152)||(15668275-15668348)
chr1 (41-152)||(49385739-49385851)
[»] chr5 (9 HSPs)
chr5 (153-457)||(29638026-29638331)
chr5 (41-152)||(29984783-29984894)
chr5 (52-144)||(19778730-19778822)
chr5 (53-152)||(33529736-33529834)
chr5 (347-427)||(10353175-10353255)
chr5 (42-152)||(43379443-43379553)
chr5 (53-154)||(3635493-3635594)
chr5 (302-445)||(1624021-1624164)
chr5 (53-153)||(3636365-3636465)
[»] chr3 (14 HSPs)
chr3 (153-457)||(676227-676532)
chr3 (28-150)||(46461865-46461986)
chr3 (42-152)||(39232257-39232367)
chr3 (54-152)||(34936715-34936813)
chr3 (40-152)||(39229402-39229514)
chr3 (72-153)||(55444569-55444650)
chr3 (42-153)||(8923584-8923696)
chr3 (41-103)||(7267445-7267508)
chr3 (53-152)||(20918278-20918377)
chr3 (53-152)||(20927240-20927339)
chr3 (55-154)||(40613771-40613870)
chr3 (51-152)||(46462617-46462718)
chr3 (72-152)||(40809579-40809659)
chr3 (40-103)||(50107617-50107681)
[»] chr4 (6 HSPs)
chr4 (153-457)||(41500640-41500945)
chr4 (52-152)||(39310396-39310496)
chr4 (52-147)||(24484788-24484883)
chr4 (52-153)||(31414816-31414917)
chr4 (72-153)||(32159510-32159591)
chr4 (42-149)||(32158802-32158910)
[»] chr7 (8 HSPs)
chr7 (1-152)||(18948171-18948322)
chr7 (29-153)||(18947285-18947409)
chr7 (11-152)||(43702722-43702863)
chr7 (17-146)||(16980477-16980605)
chr7 (52-113)||(35753033-35753094)
chr7 (41-153)||(18332804-18332916)
chr7 (41-152)||(48204147-48204259)
chr7 (41-124)||(48204929-48205013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (157-402)||(250924-251170)
[»] chr8 (12 HSPs)
chr8 (53-146)||(39309638-39309731)
chr8 (53-152)||(39308668-39308767)
chr8 (42-152)||(42503880-42503990)
chr8 (52-152)||(42578709-42578809)
chr8 (94-153)||(43235430-43235489)
chr8 (9-146)||(30146989-30147127)
chr8 (40-152)||(38443034-38443147)
chr8 (22-86)||(2581193-2581257)
chr8 (41-152)||(41889323-41889435)
chr8 (52-152)||(13017752-13017852)
chr8 (42-147)||(42503031-42503136)
chr8 (40-103)||(10910969-10911033)
[»] chr6 (1 HSPs)
chr6 (17-153)||(18065718-18065854)
[»] scaffold0330 (1 HSPs)
scaffold0330 (73-147)||(13231-13305)
[»] scaffold0151 (1 HSPs)
scaffold0151 (41-98)||(20794-20851)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 153 - 460
Target Start/End: Original strand, 30866655 - 30866956
Alignment:
Q  153 ccacggaagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctctta 251  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||           
T  30866655 ccacggaagtatatatcatccatgcttggaatgctaatgtcatgcttattgcaaaataaagttacctcctccaataaatgttcccatctatca------- 30866747  T
Q  252 gaatttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacc 351  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30866748 gagtttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgattgtcacaaataatttgaaatacc 30866847  T
Q  352 caagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctattccatctttaactaaaaca 451  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  30866848 caagacttttttcatcaaatgtaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctcttccatatttaactaaaaca 30866947  T
Q  452 tcatctttc 460  Q
    |||||||||    
T  30866948 tcatctttc 30866956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 187 - 445
Target Start/End: Complemental strand, 12158748 - 12158489
Alignment:
Q  187 taatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctcttagaatttgtaacaactcttttgtaatgttaaccaa 285  Q
    ||||| |||||||||||||||||||| ||| |||||| |||||| |||| |||  ||||||||||||| |||||||   ||| ||||| ||||||| |||    
T  12158748 taatgtcatgcttattgcaaaataaaattatctcctccaataaaggttctcattcatcatctcttagagtttgtaattgctcatttgtgatgttaatcaa 12158649  T
Q  286 gttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacccaagacttttttcatcaaatgcaatgtgattgca 385  Q
    ||||||||||||||| ||||||||||||||||| | ||| |||||| |||| | |||| | ||||| ||||| |||||||||||||||||||||  |||     
T  12158648 gttcatagcattgacgatgtcttgatcttttctttgcaaagcttgtgacaattcatttaacatacctaagacctttttcatcaaatgcaatgtgggtgcg 12158549  T
Q  386 aaatcaaaattattcattaaaagtaaaagaccatttgcttcacctattccatctttaact 445  Q
    ||||||||||||||||||| || ||||||| | |||||||| ||| ||||||| ||||||    
T  12158548 aaatcaaaattattcattagaattaaaagatcgtttgcttctcctcttccatcattaact 12158489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 6204637 - 6204511
Alignment:
Q  22 tttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatg 121  Q
    |||| ||||||| ||||  |||||  || |||||||||||| ||||||  ||||||||||||||||||| |||||||  ||||||||| |||||||||||    
T  6204637 ttttccagtaaacaaatgattttttaaaaccttttaatctctgccattgattttatatttgccacatgttaaacatctgtgaagtgaattggtataaatg 6204538  T
Q  122 gaggctccctaaatggagcaaagatgc 148  Q
    |||||||| ||||||||||||||||||    
T  6204537 gaggctccttaaatggagcaaagatgc 6204511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 33361751 - 33361851
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcact 151  Q
    |||||||||||| || || | ||| | |||||||||||||| ||||| ||| | |||| |||||||||||||| |  |||||||||||||||| ||||||    
T  33361751 cttttaatctcatcctttgggtttgtttttgccacatgtcatacatcaatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgcact 33361850  T
Q  152 c 152  Q
    |    
T  33361851 c 33361851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 16871513 - 16871611
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||||||||||| || ||||||  ||||||||||||||  |||| ||||  |||||||| |||||| || ||| ||||||||||||||||||| ||||    
T  16871513 ttttaatctcagcccttcgttttag-tttgccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactc 16871611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 20268195 - 20268121
Alignment:
Q  79 tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactcc 153  Q
    |||||||||||||| ||||| ||| | |||| |||||||||||||| |  |||||||||||||||| ||||||||    
T  20268195 tttgccacatgtcatacatcgatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgcactcc 20268121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 20268028 - 20268101
Alignment:
Q  79 tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||||||||||| ||||| ||| | |||| |||||||||||||| |  |||||||||||||||| |||||||    
T  20268028 tttgccacatgtcatacatcgatgcactgaactggtataaatggagtcatcctaaatggagcaaagttgcactc 20268101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 34229043 - 34229144
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcact 151  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||| ||||  | ||||||  ||||| ||||   | ||||||||||||||||| |||    
T  34229043 cttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggact 34229142  T
Q  152 cc 153  Q
    ||    
T  34229143 cc 34229144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 39063905 - 39063805
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcact 151  Q
    ||||||||| || |||||  ||||| ||||||||||||||| ||||| || ||||||||  | |||||| ||||   ||||||||||||||||||| |||    
T  39063905 cttttaatcccaaccattgtttttacatttgccacatgtcatacatcaataaagtgaaaatgaataaattgaggaaacctaaatggagcaaagatggact 39063806  T
Q  152 c 152  Q
    |    
T  39063805 c 39063805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 10148583 - 10148669
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggag 139  Q
    ||||||||||| || ||  |||||| ||| |||||||||| ||||||| | | ||||||||  |||||||||||| |||||||||||    
T  10148583 ttttaatctcaacccttgattttatttttaccacatgtcacacatccaaggaatgaaatggggtaaatggaggcttcctaaatggag 10148669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 10147866 - 10147799
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggag 139  Q
    |||||| |||||||||||||| |||||||   | |||||||| ||||||||||||| ||||| |||||    
T  10147866 ttttatttttgccacatgtcacacatccaacgaatgaaatgggataaatggaggcttcctaactggag 10147799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 31139683 - 31139548
Alignment:
Q  17 ttttgtttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtat 116  Q
    |||||||||||| |||| || |   |||| ||| ||||||||||||||||| | |||||||  |||| |||||||| ||||  |||||||||||  | ||    
T  31139683 ttttgtttttcattaaacaattgtattttttaaaccttttaatctcagccaatggttttattgttgcaacatgtcacacatatatgaagtgaaaaaggat 31139584  T
Q  117 aaatggaggctccctaaatggagcaaagatgcactc 152  Q
    ||||||| | |   |||||||| |||||||| ||||    
T  31139583 aaatggatgtttggtaaatggaacaaagatgtactc 31139548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 9375339 - 9375273
Alignment:
Q  86 catgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    ||||||| ||||| ||| ||||||   |||||||||||| |  ||||||||||||||||||||||||    
T  9375339 catgtcatacatctatgcagtgaacatgtataaatggagccctcctaaatggagcaaagatgcactc 9375273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 41983254 - 41983334
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||| || ||||||||||| |||||  ||||| |||| || |||||| ||| ||   ||||||||||||||||||||||    
T  41983254 ttttattttggccacatgtcacacatctgtgaagggaaaagggataaattgagccttggtaaatggagcaaagatgcactc 41983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 153 - 460
Target Start/End: Complemental strand, 23599951 - 23599643
Alignment:
Q  153 ccacggaagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctctta 251  Q
    ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||| || |||||| |||| |||  |||||||||||    
T  23599951 ccacgaaagtatatatcacccatgtttggaatgccaatgccatgcttattgcaaaataaatttacctcatccaataaaggttctcattcatcatctctta 23599852  T
Q  252 gaatttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacc 351  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||| ||||| |||| |||||| ||||||||||||    
T  23599851 gagtttgtaacaactcttttgtaatgttaaccaaattcatagcattgacgatgtcttgattttttatctgcaatgtttgtgacaaattatttgaaatacc 23599752  T
Q  352 caagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctattccatctttaactaaaaca 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||  ||||    
T  23599751 caagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccattttcttcacctcttccatctttgactgtaaca 23599652  T
Q  452 tcatctttc 460  Q
    |||||||||    
T  23599651 tcatctttc 23599643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 153 - 457
Target Start/End: Complemental strand, 4815715 - 4815410
Alignment:
Q  153 ccacggaagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctctta 251  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||||    
T  4815715 ccacggaagaatatatcatccatgcttggaatgttaatgtcatgcttattgcaaaataaaattacctcctccaataaaggttcccatccatcatctctta 4815616  T
Q  252 gaatttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacc 351  Q
    ||  ||||||   ||| ||| | ||| |||  | ||||||||||||||| |||||||||||||| || | |||||||||| |||| | |||||||| |||    
T  4815615 gagcttgtaatcgctcctttttgatgctaattaggttcatagcattgacgatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaacc 4815516  T
Q  352 caagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctattccatctttaactaaaaca 451  Q
     ||||  |||||||||||||||||||||| ||||||||||||| ||||||| | || ||||||||  |||||||||||| |||||||||||| | | |||    
T  4815515 taagatctttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagactttttgcttcacctcttccatctttaattgataca 4815416  T
Q  452 tcatct 457  Q
    ||||||    
T  4815415 tcatct 4815410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 206 - 430
Target Start/End: Complemental strand, 13392804 - 13392579
Alignment:
Q  206 aaataaagttacctcctc-aataaatgttcccatctatcatctcttagaatttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatg 304  Q
    ||||||| ||||||| || ||||||  ||| |||| |||||||||| || |||||||   ||  ||||| |||||||||||||||||| ||||||| |||    
T  13392804 aaataaaattacctcttccaataaacattctcatccatcatctctttgagtttgtaattgcttctttgtgatgttaaccaagttcataacattgacgatg 13392705  T
Q  305 tcttgatcttttctctacaatgcttgtcacaaataatttgaaatacccaagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcatta 404  Q
    |||| |||||| || | ||||| |||| |||| | |||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||| |||||||||    
T  13392704 tcttaatctttccttttcaatgattgtgacaatttatttgaaataccaaagacttttttcatcaaatgtaatatgagtgcaaaatcaaaagtattcatta 13392605  T
Q  405 aaagtaaaagaccatttgcttcacct 430  Q
     || |||||||| |||||||| ||||    
T  13392604 gaattaaaagactatttgcttgacct 13392579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 427
Target Start/End: Complemental strand, 10068760 - 10068492
Alignment:
Q  159 aagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctcttagaattt 257  Q
    |||||||| |||  |||||||||||||| | || ||||| |||||||||||||  ||||||| |  ||||||  ||| |||| ||||||||| ||| |||    
T  10068760 aagtatatgtcactcatgtttggaatgtga-tgtcatgcatattgcaaaataattttacctcatataataaagattctcatccatcatctctaagagttt 10068662  T
Q  258 gtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacccaagac 357  Q
    ||||    |  ||||| ||| ||||||  | ||||||||||||||||||||||||||| || | ||||  |||  |||| | |||||| || || |||||    
T  10068661 gtaattgtttctttgtgatgctaaccagttgcatagcattgacaatgtcttgatctttcctttgcaatatttgcgacaattcatttgagatgcctaagac 10068562  T
Q  358 ttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttca 427  Q
    ||||||||| ||||| ||||| | ||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  10068561 ttttttcattaaatgtaatgttagtgcaaaatcaaaaatattcatcaaaagtataagaccatttgcttca 10068492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 18526899 - 18526973
Alignment:
Q  79 tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactcc 153  Q
    ||||||||||||||  |||| |||| |||||| || ||||||| ||||| ||||||||||||||| ||| |||||    
T  18526899 tttgccacatgtcagtcatctatgaggtgaaaagggataaatgaaggcttcctaaatggagcaaatatggactcc 18526973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 21071213 - 21071349
Alignment:
Q  17 ttttgtttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtat 116  Q
    |||||||||||| ||||  |||||||||| ||   |||||||||  |||| |||||||||| |||  ||||||||  ||||| || || ||||| || ||    
T  21071213 ttttgtttttcattaaattaatactttttgtataacttttaatcctagcctttagttttat-tttaacacatgtcgcacatctataaaatgaaaagggat 21071311  T
Q  117 aaatggaggctccctaaatggagcaaagatgcactccc 154  Q
    ||||||||  |  ||||||||||| |||||||||||||    
T  21071312 aaatggagaattgctaaatggagcgaagatgcactccc 21071349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 15668275 - 15668348
Alignment:
Q  79 tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||||||||||| |||||||   ||||||| ||  ||||||||| || | ||||||||||||||||| ||||    
T  15668275 tttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggagcaaagatggactc 15668348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 49385739 - 49385851
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttata-tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggag 139  Q
    |||||| || ||||||||||||| || |||||||| || |||||||||||||| | |||||||| |  ||||||  ||||||| |    ||||||| |||    
T  49385739 tttttccaacccttttaatctcaacccttagttttctattttgccacatgtcacatatccatgatggtaaatggggtaaatggtgcaatcctaaattgag 49385838  T
Q  140 caaagatgcactc 152  Q
    |||||||| ||||    
T  49385839 caaagatggactc 49385851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 150; Significance: 4e-79; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 153 - 457
Target Start/End: Complemental strand, 29638331 - 29638026
Alignment:
Q  153 ccacggaagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctctta 251  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||||    
T  29638331 ccacggaagaatatatcatccatgcttggaatgttaatgtcatgcttattgcaaaataaaattacctcctccaataaaggttcccatccatcatctctta 29638232  T
Q  252 gaatttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacc 351  Q
     |  ||||||   ||| ||||| ||| |||| | |||||||||||||||||||||||||||||| || | |||||||||| |||| | |||||||| | |    
T  29638231 aagcttgtaatcgctcctttgtgatgctaactaggttcatagcattgacaatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaatc 29638132  T
Q  352 caagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctattccatctttaactaaaaca 451  Q
     ||||| |||||||||||||||||||||| ||||||||||||| ||||||| | || ||||||||| |||||||||||| |||||||||||| | | |||    
T  29638131 taagacctttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagaccttttgcttcacctcttccatctttaattgataca 29638032  T
Q  452 tcatct 457  Q
    ||||||    
T  29638031 tcatct 29638026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 29984783 - 29984894
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagc 140  Q
    |||||| |||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||    
T  29984783 tttttcgaagccttttaatctcagccattggttttttatttttcacatgtcaaacatccatgaagtgaattggtataaatggaggctctctaaaggaagc 29984882  T
Q  141 aaagatgcactc 152  Q
    ||||||||||||    
T  29984883 aaagatgcactc 29984894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 19778730 - 19778822
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaag 144  Q
    |||||||||||| || ||| ||||| ||||||||||||||||||||| || |||| ||| || ||||| ||||||| | ||||||||| ||||    
T  19778730 cttttaatctcaacccttatttttacatttgccacatgtcaaacatcaataaagtaaaaaggaataaacggaggcttcttaaatggaggaaag 19778822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 33529834 - 33529736
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||||||||||| || ||||||  ||||||||||||||  |||| ||||  |||||||| |||||| || ||| ||||||||||||||||||| ||||    
T  33529834 ttttaatctcagcccttcgttttag-tttgccacatgtcagtcatctatgagttgaaatgggataaattgaagcttcctaaatggagcaaagatgaactc 33529736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 427
Target Start/End: Complemental strand, 10353255 - 10353175
Alignment:
Q  347 atacccaagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttca 427  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||||| |  |  |  ||||||||||||||||| ||||||    
T  10353255 atacccaagacatttttcatcatatgcaatgtgaatgcaaaatcaaactcctcaaacaaaagtaaaagaccattggcttca 10353175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 43379443 - 43379553
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagca 141  Q
    ||||| || |||||||||| || || ||  |||||| |||||||||||||| ||||| | ||  || ||||| |||||||||| || | |||||||||||    
T  43379443 ttttccaaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagca 43379542  T
Q  142 aagatgcactc 152  Q
    |||||| ||||    
T  43379543 aagatgaactc 43379553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 3635594 - 3635493
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    ||||||||||| || || |||||| |||||||||||||||  |||| ||||  ||||| || | ||||| || || | ||||||||||||||||| ||||    
T  3635594 ttttaatctcaacctttcgttttaaatttgccacatgtcagtcatctatgagatgaaaagggaaaaatgaagtcttcttaaatggagcaaagatggactc 3635495  T
Q  153 cc 154  Q
    ||    
T  3635494 cc 3635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 445
Target Start/End: Original strand, 1624021 - 1624164
Alignment:
Q  302 atgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacccaagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattca 401  Q
    ||||||||||||||  | | |||||| | | |||| | |||||||||| ||||| | |||||||| ||||| ||   || |||||||  |||||| | ||    
T  1624021 atgtcttgatctttcttttgcaatgcgtctaacaattcatttgaaatatccaagtcatttttcattaaatgtaacacgagtgcaaaactaaaattgtcca 1624120  T
Q  402 ttaaaagtaaaagaccatttgcttcacctattccatctttaact 445  Q
    ||| ||||| ||||||||||||||| ||| || |||| ||||||    
T  1624121 ttagaagtataagaccatttgcttcgcctcttgcatccttaact 1624164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 3636365 - 3636465
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    ||||||||||| || ||| |||||  ||| ||||||||||  |||| ||||  ||||| || | |||||||| || | ||||||||||||||||| ||||    
T  3636365 ttttaatctcaacccttaattttaatttttccacatgtcagtcatctatgagttgaaaagggaaaaatggagccttcttaaatggagcaaagatgaactc 3636464  T
Q  153 c 153  Q
    |    
T  3636465 c 3636465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 153 - 457
Target Start/End: Original strand, 676227 - 676532
Alignment:
Q  153 ccacggaagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctctta 251  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||||    
T  676227 ccacggaagaatatatcatccatgcttggaatgttaatgtcatgcttattgcaaaataaaattacctcctccaataaaggttcccatccatcatctctta 676326  T
Q  252 gaatttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacc 351  Q
     |  ||||||   ||| ||||| ||| |||| | |||||||||||||||||||||||||||||| || | |||||||||| |||| | |||||||| | |    
T  676327 aagcttgtaatcgctcctttgtgatgctaactaggttcatagcattgacaatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaatc 676426  T
Q  352 caagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctattccatctttaactaaaaca 451  Q
     ||||| |||||||||||||||||||||| ||||||||||||| ||||||| | || ||||||||| |||||||||||| |||||||||||| | | |||    
T  676427 taagacctttttcatcaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagaccttttgcttcacctcttccatctttaattgataca 676526  T
Q  452 tcatct 457  Q
    ||||||    
T  676527 tcatct 676532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 46461986 - 46461865
Alignment:
Q  28 agtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggct 127  Q
    |||||| |||| |||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  46461986 agtaaacaaatgctttttctaaac-ttttaatctcagccattgattttatatttgccacatgtcaaacatccatgaaatgaaatggtataaatggaggct 46461888  T
Q  128 ccctaaatggagcaaagatgcac 150  Q
    | || ||||||||||||||||||    
T  46461887 ctcttaatggagcaaagatgcac 46461865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 39232257 - 39232367
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagca 141  Q
    |||||||| |||||||||||| ||| || ||| ||| || || |||||||| ||||||| ||||| ||| ||  ||||||||||||| ||||||||||||    
T  39232257 ttttctaaaccttttaatctcggcctttggttctattttagcaacatgtcacacatccaagaagtaaaaaggagtaaatggaggctctctaaatggagca 39232356  T
Q  142 aagatgcactc 152  Q
    |||||| ||||    
T  39232357 aagatggactc 39232367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 34936813 - 34936715
Alignment:
Q  54 tttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||||  ||||||| ||||||| |||||||||||||| | ||| ||||||||||| || |||||||||||     ||||||||||||||||||||||    
T  34936813 tttaatccaagccattggttttatttttgccacatgtcacaaatctatgaagtgaaaagggataaatggaggtatggtaaatggagcaaagatgcactc 34936715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 39229514 - 39229402
Alignment:
Q  40 ctttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggag 139  Q
    |||||||||| |||||||||||||| | || ||| ||| || ||||||||||| ||||| | ||||  ||| ||  ||||||||  ||| ||||||||||    
T  39229514 ctttttctaaaccttttaatctcagtctttggttctattttagccacatgtcacacatcaaagaagcaaaaaggagtaaatggaaactctctaaatggag 39229415  T
Q  140 caaagatgcactc 152  Q
    |||||||| ||||    
T  39229414 caaagatggactc 39229402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 55444569 - 55444650
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactcc 153  Q
    ||||| ||||||||||||||| ||||| || |||||||| || ||||||||||  | | |||||| |||||||||| |||||    
T  55444569 ttttacatttgccacatgtcacacatcaataaagtgaaaagggataaatggagcattcttaaatgaagcaaagatggactcc 55444650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 8923584 - 8923696
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttata-tttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagc 140  Q
    ||||| || |||||||||| ||||| || ||||| || |||||||||||||| |||||||||| |  ||||||  |||||||||    || |||||||||    
T  8923584 ttttccaacccttttaatcccagcccttggttttctaatttgccacatgtcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagc 8923683  T
Q  141 aaagatgcactcc 153  Q
    ||||||| |||||    
T  8923684 aaagatggactcc 8923696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 7267445 - 7267508
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttata-tttgccacatgtcaaacatccatga 103  Q
    |||||| || |||||||||||||||| || ||||| || |||||||||||||| ||||||||||    
T  7267445 tttttccaacccttttaatctcagcctttggttttctattttgccacatgtcacacatccatga 7267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 20918377 - 20918278
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    ||||||||||| || || |||||| |||||||||||||||  |||| |||| |||||| || | |||||||| || | |||||| || ||||||| ||||    
T  20918377 ttttaatctcaacccttcgttttaaatttgccacatgtcagtcatctatgaggtgaaaagggaaaaatggagccttcttaaatgaagtaaagatggactc 20918278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 20927339 - 20927240
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    ||||||||||| || || |||||| |||||||||||||||  |||| |||| |||||| || | |||||||| || | |||||| || ||||||| ||||    
T  20927339 ttttaatctcaacccttcgttttaaatttgccacatgtcagtcatctatgaggtgaaaagggaaaaatggagccttcttaaatgaagtaaagatggactc 20927240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 40613771 - 40613870
Alignment:
Q  55 ttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactccc 154  Q
    ||||| |||||| ||  ||| |||| |||||||||||| ||||| |  || ||||  || |||||||||||||  |||||||||||||||||| ||||||    
T  40613771 ttaatttcagcccttgatttaatatgtgccacatgtcagacatctacaaaatgaacagggataaatggaggcttgctaaatggagcaaagatgaactccc 40613870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 46462617 - 46462718
Alignment:
Q  51 ccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcac 150  Q
    ||||||||||||| || |||| ||||| |||||||  |||||  |||| ||| | | ||| ||  |||||||||| |  |||||||||||||||||||||    
T  46462617 ccttttaatctcaacctttagatttatttttgccatgtgtcagtcatctatgtattcaaaaggagtaaatggagggttgctaaatggagcaaagatgcac 46462716  T
Q  151 tc 152  Q
    ||    
T  46462717 tc 46462718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 40809659 - 40809579
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||| |||||||| ||||| ||||||||||  | |||||| |||||| ||||   || ||||||||||||||| |||||    
T  40809659 ttttatttttgccacgtgtcacacatccatgacttaaaatggaataaattgaggaaacccaaatggagcaaagatacactc 40809579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 50107681 - 50107617
Alignment:
Q  40 ctttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatga 103  Q
    ||||||| || | |||||||||||||| || ||||| ||||| ||||||||||| ||||||||||    
T  50107681 ctttttccaacctttttaatctcagcccttggttttctattttgccacatgtcacacatccatga 50107617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 153 - 457
Target Start/End: Original strand, 41500640 - 41500945
Alignment:
Q  153 ccacggaagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctctta 251  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||| |||||| ||||||||| |||||||||||    
T  41500640 ccacggaagaatatatcatccatgcttggaatgttaatgtcatgcttattgccaaataaaattacctcctccaataaaggttcccatccatcatctctta 41500739  T
Q  252 gaatttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacc 351  Q
    ||  ||||||   ||| ||||| ||| |||  | ||||||||||||||| |||||||||||||| || | |||||||||| |||| | |||||||| |||    
T  41500740 gagcttgtaatcgctcctttgtgatgctaattaggttcatagcattgacgatgtcttgatctttcctttgcaatgcttgtgacaattcatttgaaaaacc 41500839  T
Q  352 caagacttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcattaaaagtaaaagaccatttgcttcacctattccatctttaactaaaaca 451  Q
     ||||| |||||||| ||||||||||||| ||||||||||||| ||||||| | || ||||||||| |||||||||||| |||||||||||| | | |||    
T  41500840 taagacctttttcattaaatgcaatgtgagtgcaaaatcaaaagtattcatgagaattaaaagaccttttgcttcacctcttccatctttaattgataca 41500939  T
Q  452 tcatct 457  Q
    ||||||    
T  41500940 tcatct 41500945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 39310496 - 39310396
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcact 151  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||| || |  |||||||| |||||| ||||   | ||||||||||||||||| |||    
T  39310496 cttttaatctcagccattggttttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggact 39310397  T
Q  152 c 152  Q
    |    
T  39310396 c 39310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 24484883 - 24484788
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatg 147  Q
    |||||||||||||||||| ||||||| ||| |||||||||| ||||| || |  |||||| | |||||| ||||   | |||||||||||||||||    
T  24484883 cttttaatctcagccattggttttattttttccacatgtcacacatctataacttgaaataggataaattgaggaatcttaaatggagcaaagatg 24484788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 31414816 - 31414917
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcact 151  Q
    |||||||||||| || ||  ||||| ||||||||||||||| | ||| || |||||||| || |||||| ||||   | ||||||||||||||||| |||    
T  31414816 cttttaatctcaacccttctttttacatttgccacatgtcacatatcaataaagtgaaaaggaataaattgaggaaacttaaatggagcaaagatggact 31414915  T
Q  152 cc 153  Q
    ||    
T  31414916 cc 31414917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 32159510 - 32159591
Alignment:
Q  72 ttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactcc 153  Q
    |||||| ||| |||||||||| ||||||| | | ||||||||  ||||| ||||   |||||||||||||||||||||||||    
T  32159510 ttttattttttccacatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggagcaaagatgcactcc 32159591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 149
Target Start/End: Complemental strand, 32158910 - 32158802
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagc 140  Q
    |||||||| |||||||||||| ||| || ||||||  ||| || |||||||| ||||||| | | ||||||||  ||||| ||||   ||||||||||||    
T  32158910 ttttctaaaccttttaatctctgcccttggttttaacttttgctacatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggagc 32158811  T
Q  141 aaagatgca 149  Q
    | |||||||    
T  32158810 agagatgca 32158802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 18948171 - 18948322
Alignment:
Q  1 gaggataggcgtgtgtttttgtttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18948171 gaggataggcgtgtgtttttgtttttcagtaaagaaatgttttttctaagccttttaatctcagccattaattttatatttgccacatgtcaaacatcca 18948270  T
Q  101 tgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18948271 tgaagtgaaatggtataaatgaaggctccctaaatggagcaaagatgcactc 18948322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 18947409 - 18947285
Alignment:
Q  29 gtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctc 128  Q
    ||||| |||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  18947409 gtaaataaatgctttttctaagccttctaatctcaaccattggttttatatttgccacatgtccaacatctatgaagtgaaatggtataaatggaggctc 18947310  T
Q  129 cctaaatggagcaaagatgcactcc 153  Q
    |||||||||||||||||||||||||    
T  18947309 cctaaatggagcaaagatgcactcc 18947285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 43702863 - 43702722
Alignment:
Q  11 gtgtgtttttgtttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaa 110  Q
    |||||| ||| |||||| |||||  |||  ||||||||| | ||||| |||||| ||||  |||||| |||||||||| | ||||||| ||||||||||     
T  43702863 gtgtgtgtttatttttcggtaaaataatgttttttctaaacattttactctcagtcatttattttatttttgccacatatgaaacatctatgaagtgaat 43702764  T
Q  111 tggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    | ||||||||||||||||| ||||||||||||||||||||||    
T  43702763 ttgtataaatggaggctccttaaatggagcaaagatgcactc 43702722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 16980605 - 16980477
Alignment:
Q  17 ttttgtttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtat 116  Q
    |||||||||||| |||| || |||||||| |||  |||||||||  |||| |||||||||| |||| || |||||| |||||  | |||||||| ||  |    
T  16980605 ttttgtttttcattaaa-aagtactttttgtaaatcttttaatcctagcctttagttttatttttgacagatgtcacacatctgtaaagtgaaaaggagt 16980507  T
Q  117 aaatggaggctccctaaatggagcaaagat 146  Q
    |||| ||||||  |||||||||||||||||    
T  16980506 aaattgaggcttgctaaatggagcaaagat 16980477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 35753033 - 35753094
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatgg 113  Q
    ||||||||| ||||||||  |||||| |||||||||||||| ||||| |||| |||||||||    
T  35753033 cttttaatcacagccattgattttatttttgccacatgtcatacatctatgacgtgaaatgg 35753094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 18332804 - 18332916
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagc 140  Q
    |||| |||| |||||||||||| | | || ||| ||| || ||||||||||| ||||||| ||||  |||  |  |||||||||| || |||||||||||    
T  18332804 ttttactaaaccttttaatctcggtctttggttctattttagccacatgtcacacatccaagaagcaaaaaagagtaaatggaggttctctaaatggagc 18332903  T
Q  141 aaagatgcactcc 153  Q
    ||||||| |||||    
T  18332904 aaagatggactcc 18332916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 48204259 - 48204147
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggag 139  Q
    |||||| || |||||||||||||||| ||  |||| | ||| ||||||||||| |||||||||| |  |||| | ||||||||||    | |||||||||    
T  48204259 tttttccaacccttttaatctcagcctttgattttttcttttgccacatgtcatacatccatgatggtaaataggataaatggagcaaacttaaatggag 48204160  T
Q  140 caaagatgcactc 152  Q
    |||||||| ||||    
T  48204159 caaagatggactc 48204147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 48204929 - 48205013
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatgaagtgaaatggtataaatggag 124  Q
    |||||| || |||||||||| ||||| ||  |||| ||||| ||||||||||| |||||||||| |  ||||||| |||||||||    
T  48204929 tttttccaacccttttaatcccagcccttgattttttattttgccacatgtcacacatccatgatggtaaatggtgtaaatggag 48205013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 157 - 402
Target Start/End: Original strand, 250924 - 251170
Alignment:
Q  157 ggaagtatatatcatccatgtttggaatgttaatgccatgcttattgcaaaataaagttacctcctc-aataaatgttcccatctatcatctcttagaat 255  Q
    ||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||||| || |||||| ||||| ||| |||||||||||||      
T  250924 ggaagaatatatcatccatgtttggaatgctaatatcatgcttattgcaaaataaaattacctcatccaataaaggttcctatccatcatctcttagagc 251023  T
Q  256 ttgtaacaactcttttgtaatgttaaccaagttcatagcattgacaatgtcttgatcttttctctacaatgcttgtcacaaataatttgaaatacccaag 355  Q
    ||||||   ||| ||||| |||||||||| ||||||| ||||||  || ||||||||||| || | |||||||||| |||| | ||| |||||||  |||    
T  251024 ttgtaatcgctcctttgtgatgttaaccaggttcataacattgatgatatcttgatctttcctttgcaatgcttgtgacaattcattcgaaatacttaag 251123  T
Q  356 acttttttcatcaaatgcaatgtgattgcaaaatcaaaattattcat 402  Q
    || |||||||||||||||||||||| |||||||||||||||||||||    
T  251124 acctttttcatcaaatgcaatgtgagtgcaaaatcaaaattattcat 251170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 39309638 - 39309731
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagat 146  Q
    |||||||||||||| ||  ||||   ||||||||||||||| |||| |||| |||||| || ||||||||||| | ||||||||||||||||||    
T  39309638 ttttaatctcagcccttcatttttgttttgccacatgtcaatcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagat 39309731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 39308767 - 39308668
Alignment:
Q  53 ttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactc 152  Q
    |||||||| ||||| ||  |||||  ||||||||||||||  |||| |||| |||||| || ||||||||||| | ||||||||||||||||||| ||||    
T  39308767 ttttaatcccagcccttcattttagttttgccacatgtcagtcatctatgaggtgaaaagggataaatggaggtttcctaaatggagcaaagatggactc 39308668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 42503880 - 42503990
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagca 141  Q
    ||||| || |||||||||| ||||||||| |||||| ||| |||||||||| ||||| ||||  || |||||  ||||| ||||   |||||||||||||    
T  42503880 ttttccaaaccttttaatcacagccattaattttattttttccacatgtcacacatctatgatatggaatggggtaaattgaggaagcctaaatggagca 42503979  T
Q  142 aagatgcactc 152  Q
    |||||| ||||    
T  42503980 aagatggactc 42503990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 42578809 - 42578709
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcact 151  Q
    ||||||||||||||||||  |||||| |||||||||||||| ||||| ||||  ||||||||  ||||| |||    | ||||||||||||||||| |||    
T  42578809 cttttaatctcagccattgattttatttttgccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatggact 42578710  T
Q  152 c 152  Q
    |    
T  42578709 c 42578709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 43235489 - 43235430
Alignment:
Q  94 acatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatgcactcc 153  Q
    ||||| ||||||||||| || |||||||||||||   |||||||||||||||||||||||    
T  43235489 acatctatgaagtgaaaagggataaatggaggcttggtaaatggagcaaagatgcactcc 43235430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 30146989 - 30147127
Alignment:
Q  9 gcgtgtgtttttgtttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccac-atgtcaaacatccatgaagtg 107  Q
    ||||||| |||| ||||||  ||||||| |  |||| |||| |||||||||||||||||||| ||| || ||| |||| |||||| |||| || ||||||    
T  30146989 gcgtgtgcttttttttttctttaaagaattgtttttcctaaaccttttaatctcagccattaatttcattttttccactatgtcacacattcaagaagtg 30147088  T
Q  108 aaatggtataaatggaggctccctaaatggagcaaagat 146  Q
       ||| |||||| ||||||   ||||||||||||||||    
T  30147089 ggctgggataaattgaggctttgtaaatggagcaaagat 30147127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 38443147 - 38443034
Alignment:
Q  40 ctttttctaagccttttaatctcagccattagttttatattt-gccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatgga 138  Q
    ||||||| || ||||||||||||| || || ||||| ||||| ||||||||||| |||||||||| |  ||||||  |||||||||    | ||||||||    
T  38443147 ctttttccaacccttttaatctcaacccttggttttctattttgccacatgtcacacatccatgatggtaaatggggtaaatggagcagacttaaatgga 38443048  T
Q  139 gcaaagatgcactc 152  Q
    ||||||||| ||||    
T  38443047 gcaaagatggactc 38443034  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 2581257 - 2581193
Alignment:
Q  22 tttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccac 86  Q
    |||| ||||||| |||| |||||| ||||| ||||||||||| ||||| |||| |||||||||||    
T  2581257 ttttccagtaaacaaatgctttttttaagctttttaatctcaaccattggtttcatatttgccac 2581193  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 41889435 - 41889323
Alignment:
Q  41 tttttctaagccttttaatctcagccattagtttt-atatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggag 139  Q
    |||||| || |||||||||||||||| ||  |||| || |||||||||||||| |||||||   ||||||| ||  ||||||||| || | ||||||||     
T  41889435 tttttccaacccttttaatctcagcccttgattttcatttttgccacatgtcacacatccaaacagtgaaaaggagtaaatggagccttcttaaatggaa 41889336  T
Q  140 caaagatgcactc 152  Q
    |||||||| ||||    
T  41889335 caaagatggactc 41889323  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 13017752 - 13017852
Alignment:
Q  52 cttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccc-taaatggagcaaagatgcac 150  Q
    |||||||||| |||| ||  |||| | |||||||||||||| | ||| ||| ||||||  ||| ||||||||| ||| | ||||||||||||||||||||    
T  13017752 cttttaatctgagcctttgattttgtttttgccacatgtcataaatctatgcagtgaacaggtgtaaatggag-ctctcataaatggagcaaagatgcac 13017850  T
Q  151 tc 152  Q
    ||    
T  13017851 tc 13017852  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 42503136 - 42503031
Alignment:
Q  42 ttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagca 141  Q
    ||||| || |||||||||| ||||||||  |||||| ||| | |||||||| ||||| ||||  ||||||||  ||||| ||||   | |||||||||||    
T  42503136 ttttccaaaccttttaatcacagccattgattttattttttctacatgtcacacatctatgatatgaaatggggtaaattgaggaaacttaaatggagca 42503037  T
Q  142 aagatg 147  Q
    ||||||    
T  42503036 aagatg 42503031  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 10910969 - 10911033
Alignment:
Q  40 ctttttctaagccttttaatctcagccattagttttata-tttgccacatgtcaaacatccatga 103  Q
    ||||||| || ||||||||||| ||||||| ||||| || ||| |||||||||| ||||||||||    
T  10910969 ctttttccaacccttttaatcttagccattggttttctattttaccacatgtcacacatccatga 10911033  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 18065854 - 18065718
Alignment:
Q  17 ttttgtttttcagtaaagaaatactttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatccatgaagtgaaatggtat 116  Q
    |||||||||||| |||| || ||| |||| |||    |||||||  ||||||| ||||||| |||||||||||||| | ||| || |||| ||| || ||    
T  18065854 ttttgtttttcactaaacaattacattttataaaatctttaatcctagccattggttttatttttgccacatgtcatatatctataaagtaaaaagggat 18065755  T
Q  117 aaatggaggctccctaaatggagcaaagatgcactcc 153  Q
    ||||||||| |   |||||||||||||||||||||||    
T  18065754 aaatggaggtttggtaaatggagcaaagatgcactcc 18065718  T

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Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 13231 - 13305
Alignment:
Q  73 tttatatttgccacatgtcaaacatccatgaagtgaaatggtataaatggaggctccctaaatggagcaaagatg 147  Q
    |||| ||||||||||||||| ||||| || |||||||| || |||||| ||||   |||||||||||||||||||    
T  13231 tttaaatttgccacatgtcacacatcaataaagtgaaaaggaataaattgaggaaacctaaatggagcaaagatg 13305  T

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Target: scaffold0151 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 20851 - 20794
Alignment:
Q  41 tttttctaagccttttaatctcagccattagttttatatttgccacatgtcaaacatc 98  Q
    |||||| || ||||||||||||||||||| ||||||| ||| |||||||||| |||||    
T  20851 tttttccaaaccttttaatctcagccattggttttatttttaccacatgtcacacatc 20794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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