View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10061_low_20 (Length: 228)

Name: NF10061_low_20
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10061_low_20
NF10061_low_20
[»] chr8 (1 HSPs)
chr8 (1-222)||(29116106-29116338)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29116106 - 29116338
Alignment:
Q  1 tttcggttgcaatttcacacgcctcacttctaagcatgatcaaaatttgaattagtcaaatagcttactcacccctattatttatttctacaccatgtgg 100  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29116106 tttcggttgcaatttcacacgcctcact---aagcatgatcaaaatttgaattagtcaaatagcttactcacccctattatttatttctacaccatgtgg 29116202  T
Q  101 tttaattaaataattaaatatcgaataaatctttatataccgtgtataaaatattagga--------------tgtaacaaatgtgattctgaacatgga 186  Q
    ||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||              |||||||||||||||||||||||||||    
T  29116203 tttaattaaataattaaatattgaataaatctttatacaacgtgtataaaatattaggatgttacaagccctttgtaacaaatgtgattctgaacatgga 29116302  T
Q  187 atgtatgtcattaaagacaaaagcaaaggggtaatc 222  Q
    ||||||||||||||||||||||||||||||||||||    
T  29116303 atgtatgtcattaaagacaaaagcaaaggggtaatc 29116338  T

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