View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10061_low_21 (Length: 222)
Name: NF10061_low_21
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 3722709 - 3722810
Alignment:
| Q |
18 |
agagatctaggaattgaaggagtaatgaactataattaatgaagaggcgatgaccaaaatctataacaatgttcttttttccgcagctgtaacaatcgct |
117 |
Q |
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| T |
3722709 |
agagatcaaggaattgaaggagtaatgaactataattaacgaagaggcgatgaccaaaatctaaaacaatgttctttttttcgcagctgtaacgatcgct |
3722808 |
T |
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| Q |
118 |
cg |
119 |
Q |
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|| |
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| T |
3722809 |
cg |
3722810 |
T |
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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 35739644 - 35739467
Alignment:
| Q |
22 |
atctaggaattgaaggagtaatgaactataattaatgaagaggcgatgaccaaaatctataa-caatgttcttttttccgcagctgtaacaatcgctcgc |
120 |
Q |
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| T |
35739644 |
atctaagaattgaaggagtaatgaaccgtaaagaaagaagaggtgatgaccaaaatctagaaaccgtcttcttttttc-gcagttgtaat----ggtcgc |
35739550 |
T |
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| Q |
121 |
ggtcgtaacgttgttacatcccggcattttcgtgtgattttccttctcacctttaaatcgggcaaaaacggtatcgtcgcttg |
203 |
Q |
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| T |
35739549 |
ggtcgtaacggcgttacatcacggcgttttcgtgtgattttccttcccaccattaaatcgggcaaaaacggtaacatcgcttg |
35739467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 37081010 - 37081194
Alignment:
| Q |
10 |
ggaggagcagagatctaggaattgaaggagtaatgaa-ctataattaatgaagaggcgatgaccaaaatct-ataacaatgttcttttttccgcagctgt |
107 |
Q |
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| T |
37081010 |
ggaggaggagagatctgggaattgaaggagtaatgaagctataaataaagaggatgtgatgaccaagatctggaaactgtgttctgtttt-cgcagctat |
37081108 |
T |
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| Q |
108 |
aacaatcgctcgcggtcgtaacgttgttacatcccggcattttcgtgtgattttccttctcacc-tttaaatcgggcaaaaacggt |
192 |
Q |
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| T |
37081109 |
aacgatcggtcgcggctgtaacggcgttacgtaacggcgatttcatgtgatttttcttcccaccgtttaaaacaggcaaaaacggt |
37081194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 29521956 - 29522023
Alignment:
| Q |
10 |
ggaggagcagagatctaggaattgaaggagtaatgaactataattaatgaagaggcgatgaccaaaat |
77 |
Q |
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| T |
29521956 |
ggaggaggagagatctaggaattgaaggagtaatgaactgtaaataaagaagaggtgatgaccaaaat |
29522023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 29522072 - 29522123
Alignment:
| Q |
152 |
gtgtgattttccttctcacctttaaatcgggcaaaaacggtatcgtcgcttg |
203 |
Q |
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|||||||||| |||| |||| ||||||||||||||||||||||||||||||| |
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| T |
29522072 |
gtgtgattttacttcccaccgttaaatcgggcaaaaacggtatcgtcgcttg |
29522123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 41968854 - 41968787
Alignment:
| Q |
10 |
ggaggagcagagatctaggaattgaaggagtaatgaactataattaatgaagaggcgatgaccaaaat |
77 |
Q |
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||||||| ||||||||| |||||||| ||||||||||| ||| ||| ||||||| |||||||||||| |
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| T |
41968854 |
ggaggaggagagatctaagaattgaactagtaatgaactgtaaataaagaagaggtgatgaccaaaat |
41968787 |
T |
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