View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10061_low_23 (Length: 208)
Name: NF10061_low_23
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_23 |
 | |
|
| [»] scaffold0566 (1 HSPs) |
| | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 31571368 - 31571166
Alignment:
| Q |
1 |
aggctgccagcgaaaaagagcaatgtggttgattcgaagacaaaggaggcatcattaattgttagtacaacgggttatcacagcgtcgacggtgcaaccc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31571368 |
aggctgccagcgaaaaggagcaatgtggttgattcaaagacaaaggaggcaacattaattgttagtacaacgggttatcacagcgtcgacggtgcaaccc |
31571269 |
T |
|
| Q |
101 |
ctacaaatgtcgggcttttctaccatttgtttatttagttttctttcctgaattctatttttatatgctcattcctccttttaattttctattacaggtt |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31571268 |
ctacaaatgctgggcttttctaccatttgtttctttagttttctttcctgaattctatttttatatgctcattcctccttttaattttctattacaggtt |
31571169 |
T |
|
| Q |
201 |
ttt |
203 |
Q |
| |
|
||| |
|
|
| T |
31571168 |
ttt |
31571166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 6508023 - 6507819
Alignment:
| Q |
1 |
aggctgccagcgaaaaagagcaatgtggttgattcgaagacaaaggaggcatcattaattgttagtacaacgggttatcacagcgtcgacggtgcaaccc |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6508023 |
aggctgccagcgaaaaggagcaatatggttgatttgaagacaaaggaggcatcattaattgttagtacaacgggttatcacagcgtcgacggtgcaaccc |
6507924 |
T |
|
| Q |
101 |
ctacaaatgtcgggcttttctaccatttgtttatttagttttctttcctgaattctatttttatatgctcattcctccttttaattttctattacaggtt |
200 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6507923 |
ctataaatgtcgggcttttttactatttgtttctttagttttctttcctgaattatatttttatatgctcattcctccttttgattttctattacaggtt |
6507824 |
T |
|
| Q |
201 |
tttac |
205 |
Q |
| |
|
||||| |
|
|
| T |
6507823 |
tttac |
6507819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10068 - 10271
Alignment:
| Q |
1 |
aggctgccagcgaaaaagagcaatgtggttgattcgaagacaaaggaggcatcattaattgttagtacaacgggttatcacagcgtcgacggtgcaaccc |
100 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10068 |
aggctgccagctaaaaggagcaatgttgttgattcgaagacaaaggaggcatcattaattgttagtacaacgggttatcacagcgtcgacggtgcaacca |
10167 |
T |
|
| Q |
101 |
ctacaaatgtcgggcttttctaccatttgtttatttagttttctttcctgaattctatttttatatgctcattcctccttttaattttctattacaggtt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || ||||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
10168 |
ctacaaatgtcgggcttttctgccatttgtttcttcagttttctttcctcagttctatttttatatgct-attcctccttttgattttctattacaggtt |
10266 |
T |
|
| Q |
201 |
tttac |
205 |
Q |
| |
|
||||| |
|
|
| T |
10267 |
tttac |
10271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 50379266 - 50379188
Alignment:
| Q |
2 |
ggctgccagcgaaaaagagcaatgtggttgattcgaagacaaaggaggcatcattaattgttagtacaacgggttatca |
80 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||||||| |
|
|
| T |
50379266 |
ggctgccagcgaaaaggagcaatgtggttgattcgaagaccaaggaagcatcatcaattgttagtaaaacgggttatca |
50379188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 50379187 - 50379108
Alignment:
| Q |
125 |
atttgtttatttagttttctttcctgaattctatttttatatgctcattcctccttttaattttctattacaggtttttac |
205 |
Q |
| |
|
||||||||||| | |||| |||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
50379187 |
atttgtttattcaatttt-tttcctcaattctatttttatatgcttattcctccttttgattgtctattacaagtttttac |
50379108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 1968269 - 1968191
Alignment:
| Q |
2 |
ggctgccagcgaaaaagagcaatgtggttgattcgaagacaaaggaggcatcattaattgttagtacaacgggttatca |
80 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||| ||| | ||||||||||||||||||| || ||||||||| |
|
|
| T |
1968269 |
ggctgccagcgaaaaggagcaatgtggttgattcaaagaccaagaaagcatcattaattgttagtaaaatgggttatca |
1968191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 1968190 - 1968111
Alignment:
| Q |
125 |
atttgtttatttagttttctttcctgaattctatttttatatgctcattcctccttttaattttctattacaggtttttac |
205 |
Q |
| |
|
||||||||||| | |||| |||| | ||||||||||||||||||| |||||||||||| ||||||||||| | |||||||| |
|
|
| T |
1968190 |
atttgtttattcaattttttttc-tcaattctatttttatatgcttattcctccttttgattttctattataagtttttac |
1968111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 468 - 526
Alignment:
| Q |
2 |
ggctgccagcgaaaaagagcaatgtggttgattcgaagacaaaggaggcatcattaatt |
60 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
468 |
ggctggcagcgtaaaggagcaatgtggttgattcaaagataaaggaggcatcattaatt |
526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University