View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10061_low_3 (Length: 463)
Name: NF10061_low_3
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 103 - 447
Target Start/End: Original strand, 28029876 - 28030219
Alignment:
| Q |
103 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattnnnnnnnggacagaaaatgagatcttaacttttacatgcctaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28029876 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattaaaaaa-ggacagaaaatgagatcttaacttttacatgcctaa |
28029974 |
T |
|
| Q |
203 |
cagttagacaacaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28029975 |
tagttagacaacaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactc |
28030074 |
T |
|
| Q |
303 |
caaaagattgaatcatctcgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctct |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28030075 |
caaaagattgaatcatctcgccttttgtgaattcatccacgcaaataggacaatcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctct |
28030174 |
T |
|
| Q |
403 |
tattgcacacctagcaatctctgcaatcgtgccgaaagacatatt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28030175 |
tattgcacacctagcaatctctgcaatcgtgccgaaagacatatt |
28030219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 213 - 354
Target Start/End: Original strand, 33142145 - 33142288
Alignment:
| Q |
213 |
acaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggcca--cacactccaaaagat |
310 |
Q |
| |
|
||||||| || ||||||| ||||||||| |||||||||||||||||||| || ||||| || | | |||||||||||| || || || ||||||| | |
|
|
| T |
33142145 |
acaaatcttgacgacaaattggacaagttgtttttcctccaagtaaccaagaattgaggcatgatgaatgaaattcatgagcacccaaaccccaaaaggt |
33142244 |
T |
|
| Q |
311 |
tgaatcatctcgccttttgtgaattcatccatgcaaataggaca |
354 |
Q |
| |
|
||||||| ||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
33142245 |
tgaatcaactcccctttagtaaattcttccatgcaaataggaca |
33142288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 28029811 - 28029847
Alignment:
| Q |
38 |
gaaaattctcgacagagggatttcattaatcaaatag |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28029811 |
gaaaattctcgacagagggatttcattaatcaaatag |
28029847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 423
Target Start/End: Original strand, 33143337 - 33143538
Alignment:
| Q |
213 |
acaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactccaaaagattg |
312 |
Q |
| |
|
||||||| || || ||||| || ||||| |||||||| ||||||||||| || ||||| || | | |||||||||||| |||||| |||||| ||| |
|
|
| T |
33143337 |
acaaatcttgacggcaaacggggcaagttgtttttcccccaagtaaccaagaattgaggcaagaggaatgaaattcatgaacacacaaatcaaaaggttg |
33143436 |
T |
|
| Q |
313 |
aatcatctcgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctcttattgcacac |
412 |
Q |
| |
|
||||| ||| ||||| | |||| ||||||||||||||||| ||| ||| ||| | || |||||||||||||||| |||||||| | ||| |
|
|
| T |
33143437 |
aatcaactcccctttcttaaattgttccatgcaaataggacaatca---------tcaacattagaggttttaaccggcggcaacgctcttatcgtgcac |
33143527 |
T |
|
| Q |
413 |
ctagcaatctc |
423 |
Q |
| |
|
||||||||||| |
|
|
| T |
33143528 |
ctagcaatctc |
33143538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University