View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10061_low_5 (Length: 433)
Name: NF10061_low_5
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 10371965 - 10371559
Alignment:
| Q |
15 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaaaaatatttttgattgggatta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10371965 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaaaaatatttttgattgggatta |
10371866 |
T |
|
| Q |
115 |
atacaaaacctgctacaaaatctagaaagtcaggaccaaaacttctttttacaatcaattccttca-----gtacaatcaaaacttcttttgacagcagg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10371865 |
atacaaaacctgctacaaaatctagaaagtcaggaccaaaacttctttttacaatcaattccttcaactatgtacaatcaaaacttcttttgacagcagg |
10371766 |
T |
|
| Q |
210 |
aaatgtaatttcaaccgtcacccccacagcaaaaatggaattaagtttttggagtgtatataaatcttctcaatttctcatgctgtgtcataaacttcag |
309 |
Q |
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| T |
10371765 |
aaatgtaatttcaaccgtcacccccacagcaaaaatggaattaagtttttggagtgtatataaatcttctcaatttctcatgctgtgtcataaacttcag |
10371666 |
T |
|
| Q |
310 |
tgacggtattatatgttacaattgtcggagcgaaaaaccacctctccatgaaatccacgttcttgattttatcatacatgcctgctttgccataggacct |
409 |
Q |
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| T |
10371665 |
tgacgatattatatgttacaattgtcggagcgaaaaaccacctctccatgaaatccacgttcttgattttatcatacatgcctgctttgccataggacct |
10371566 |
T |
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| Q |
410 |
tatcatc |
416 |
Q |
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||||||| |
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| T |
10371565 |
tatcatc |
10371559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 273 - 416
Target Start/End: Original strand, 10489250 - 10489396
Alignment:
| Q |
273 |
atcttctcaatttctcatgctgtgtcataaacttcagtgacggtattatatgttacaattgtcggagcgaaaaaccacctctccatgaaatcca---cgt |
369 |
Q |
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|||||||||||||||| ||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |
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| T |
10489250 |
atcttctcaatttctccggctttgccataaacttcaatgacggtattatatgttacaattgttggagcgaaaaacctcctctccatgaaatccatcacac |
10489349 |
T |
|
| Q |
370 |
tcttgattttatcatacatgcctgctttgccataggaccttatcatc |
416 |
Q |
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|||| || ||||| |||||||||||||||||||| ||| |||||||| |
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| T |
10489350 |
tcttcatcttatcgtacatgcctgctttgccatacgactttatcatc |
10489396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 9843007 - 9843105
Alignment:
| Q |
321 |
tatgttacaattgtcggagcgaaaaaccacctctccatgaaatcc---acgttcttgattttatcatacatgcctgctttgccataggaccttatcatc |
416 |
Q |
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|||||||||||||||||||| ||||||| || ||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9843007 |
tatgttacaattgtcggagcaaaaaacctccgctccatgaaatccgtcactgtctttattttatcatacatgcctgctttgccataggactttatcatc |
9843105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 416
Target Start/End: Original strand, 9853703 - 9853799
Alignment:
| Q |
321 |
tatgttacaattgtcggagcgaaaaaccacctctccatgaaatcc-acgttcttgattttatcatacatgcctgctttgccataggaccttatcatc |
416 |
Q |
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|
|||||||||||||||||||| ||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||| |||||| |||||||| |
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| T |
9853703 |
tatgttacaattgtcggagcaaaaaacctcctctccatgaaatccgtcagtctttattttatcatacatgcctgctttgccctaggactttatcatc |
9853799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 10093841 - 10093919
Alignment:
| Q |
15 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaa |
93 |
Q |
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||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
10093841 |
gagcagaaaatagaaactggtctaacatgcatatttattttcacacaattgaactttaatatgttttaagctatagaaa |
10093919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 10200723 - 10200801
Alignment:
| Q |
15 |
gagcagagaatagaaactgatctagcatgcatattcattttcacataattgaactttaatatattttaagctatagaaa |
93 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
10200723 |
gagcagaaaatagaaactggtctaacatgcatatttattttcacacaattgaactttaatatgttttaagctatagaaa |
10200801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 10100633 - 10100675
Alignment:
| Q |
92 |
aaaaatatttttgattgggattaatacaaaacctgctacaaaa |
134 |
Q |
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| T |
10100633 |
aaaaatatttttgattgggaaaaatacaaaacctgatacaaaa |
10100675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 10208542 - 10208584
Alignment:
| Q |
92 |
aaaaatatttttgattgggattaatacaaaacctgctacaaaa |
134 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
10208542 |
aaaaatatttttgattgggaaaaatacaaaacctgatacaaaa |
10208584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 32312053 - 32311998
Alignment:
| Q |
310 |
tgacggtattatatgttacaattgtcggagcgaaaaaccacctctccatgaaatcc |
365 |
Q |
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||||||| ||||||||||||| ||| ||| ||||||||| |||||||||||||||| |
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| T |
32312053 |
tgacggtgttatatgttacaactgttggaacgaaaaacctcctctccatgaaatcc |
32311998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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