View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10061_low_6 (Length: 420)

Name: NF10061_low_6
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10061_low_6
NF10061_low_6
[»] chr8 (4 HSPs)
chr8 (1-409)||(43052608-43053032)
chr8 (106-165)||(2235643-2235702)
chr8 (137-196)||(5227528-5227587)
chr8 (128-201)||(8062317-8062390)
[»] chr1 (15 HSPs)
chr1 (106-204)||(10199395-10199493)
chr1 (120-201)||(34290224-34290305)
chr1 (106-204)||(4576790-4576888)
chr1 (106-204)||(7136985-7137083)
chr1 (126-204)||(45975675-45975753)
chr1 (128-196)||(5592694-5592762)
chr1 (106-161)||(25479609-25479664)
chr1 (121-207)||(38578509-38578596)
chr1 (128-186)||(16322852-16322910)
chr1 (132-197)||(4700079-4700144)
chr1 (146-207)||(33546480-33546541)
chr1 (127-207)||(836347-836427)
chr1 (109-161)||(16981926-16981978)
chr1 (104-164)||(20713681-20713741)
chr1 (106-207)||(38170677-38170780)
[»] chr2 (5 HSPs)
chr2 (120-207)||(39236496-39236583)
chr2 (106-160)||(43717123-43717177)
chr2 (138-207)||(1899923-1899992)
chr2 (128-196)||(7103491-7103560)
chr2 (126-207)||(12313180-12313261)
[»] chr5 (5 HSPs)
chr5 (106-186)||(17258870-17258950)
chr5 (126-202)||(41981872-41981948)
chr5 (106-202)||(2568645-2568741)
chr5 (142-198)||(6593290-6593346)
chr5 (109-153)||(41225088-41225132)
[»] chr4 (6 HSPs)
chr4 (142-207)||(3155585-3155650)
chr4 (126-207)||(25332756-25332838)
chr4 (142-207)||(53294137-53294202)
chr4 (142-186)||(20105453-20105497)
chr4 (128-196)||(33534178-33534246)
chr4 (121-161)||(55084483-55084523)
[»] chr7 (6 HSPs)
chr7 (106-202)||(752956-753052)
chr7 (142-214)||(39907778-39907850)
chr7 (138-207)||(12110342-12110411)
chr7 (138-207)||(43694589-43694658)
chr7 (128-204)||(15075094-15075170)
chr7 (108-160)||(33708432-33708484)
[»] chr3 (5 HSPs)
chr3 (116-160)||(24785290-24785334)
chr3 (142-201)||(30443881-30443940)
chr3 (106-193)||(40122740-40122827)
chr3 (111-161)||(24785233-24785283)
chr3 (125-202)||(28622005-28622082)
[»] scaffold0091 (1 HSPs)
scaffold0091 (137-196)||(6945-7004)
[»] chr6 (4 HSPs)
chr6 (126-201)||(9109258-9109333)
chr6 (126-157)||(33737774-33737805)
chr6 (121-161)||(28641751-28641791)
chr6 (127-211)||(35070475-35070559)


Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 43052608 - 43053032
Alignment:
Q  1 cttgagagagttatgggtttccaggtgggtatgggcattttagtgaaaaacactaacaacttgacaatgtaggtcagtcttgtaatgacttaaagtaaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052608 cttgagagagttatgggtttccaggtgggtatgggcattttagtgaaaaacactaacaacttgacaatgtaggtcagtcttgtaatgacttaaagtaaag 43052707  T
Q  101 gaatgtgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052708 gaatgtgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaa 43052807  T
Q  201 aataattaaacctttttggagaagccaaaagatatatcatgaaataacacagtgcttaaattggaaaagcgcac-------------------tctcaaa 281  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||                   |||||||    
T  43052808 aataattaaacctttttggagaagccaaaagatatatcataaaataacacagtgcttaaattggaaaagcgcactcaaagcatgacaaaagagtctcaaa 43052907  T
Q  282 tataacaaactaaaatcaacaacaatcacatcaagtaatcctaatccctaaacaagacatgagattattccaccaatgattcatatcaaaggtgaaacct 381  Q
    ||||||||||||||||   |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052908 tataacaaactaaaat---caacaagcacatcaattaatcctaatccctaaacaagacatgagattattccaccaatgattcatatcaaaggtgaaacct 43053004  T
Q  382 tttttcttaaccttcaaccaccaccaaa 409  Q
    ||||||||||||||||||||||||||||    
T  43053005 tttttcttaaccttcaaccaccaccaaa 43053032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 2235643 - 2235702
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaa 165  Q
    ||||||||||||| ||||| ||||||||| | |||||||| |||| ||||||||||||||    
T  2235643 tgaaaatagtttatgacatgttcataagtcgtttttagctcatttccataagctctttaa 2235702  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 5227587 - 5227528
Alignment:
Q  137 gttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttata 196  Q
    |||||||||||||||||||||||||| |   ||| ||| ||||||||||| |||||||||    
T  5227587 gttttagcttattttcataagctcttcatgatagcttacaaaaacagcttatagcttata 5227528  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 8062390 - 8062317
Alignment:
Q  128 cataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaa 201  Q
    |||||| || ||| ||||||||| ||||| |||| |||  ||| |||| |||||||||| ||||||||||||||    
T  8062390 cataagatgttttcagcttatttccataatctctctaagatagcttatgaaaacagcttatagcttatacaaaa 8062317  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 10199395 - 10199493
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaata 204  Q
    ||||||||| ||| ||||| ||||||||||| ||| |||||||||||||||||||| |||| ||| |||| |||| ||||| | | |||||| ||||||    
T  10199395 tgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttatcgattatacgaaaata 10199493  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 34290305 - 34290224
Alignment:
Q  120 gacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaa 201  Q
    ||||| ||||||||||| ||| |||||||||||||||| |||| ||  ||| |||| |||||||||| ||||||||||||||    
T  34290305 gacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttatacaaaa 34290224  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 4576888 - 4576790
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaata 204  Q
    ||||||||||||| ||||| || ||||||||  || |||||||||||||||| | || ||  ||| |||| |||||||||| || ||| ||||||||||    
T  4576888 tgaaaatagtttatgacatgtttataagttgtgttcagcttattttcataagttattcaatatagcttatgaaaacagcttataacttgtacaaaaata 4576790  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 7136985 - 7137083
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaata 204  Q
    ||||||| | ||| ||||| ||||||||||  ||| |||||||||||||||| |||  ||  ||| |||| |||||||||| ||| |||||||||||||    
T  7136985 tgaaaatcgcttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttatagattatacaaaaata 7137083  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 45975753 - 45975675
Alignment:
Q  126 ttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaata 204  Q
    |||||||| || ||| |||||||||||||||  |||  ||  ||| |||| ||||||||||||||||||||||||||||    
T  45975753 ttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaaacagcttgtagcttatacaaaaata 45975675  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 5592694 - 5592762
Alignment:
Q  128 cataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttata 196  Q
    ||||||||| ||  ||||||||||||||||||||| | ||||| |||| |||||| ||| |||||||||    
T  5592694 cataagttgtttccagcttattttcataagctcttaagactagcttatgaaaacaacttatagcttata 5592762  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 25479664 - 25479609
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctct 161  Q
    ||||||||| ||| ||||| ||||| ||||| ||| ||||||||||||||||||||    
T  25479664 tgaaaatagattatgacatgttcattagttgttttcagcttattttcataagctct 25479609  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 38578596 - 38578509
Alignment:
Q  121 acatcttcataagttggttttagcttatttt-cataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    |||| ||||||||||| ||| |||||||||| ||||| |||||   | ||||||||  ||||| ||| ||||||||||||||||||||    
T  38578596 acatattcataagttgttttgagcttatttttcataaactcttctcaatagtttatgtaaacaacttatagcttatacaaaaataatt 38578509  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 16322910 - 16322852
Alignment:
Q  128 cataagttggttttagcttattttcataagctctttaaactagtttataaaaacagctt 186  Q
    ||||||||| ||||||||||||| ||||||||||| ||| |||  ||| ||||||||||    
T  16322910 cataagttgtttttagcttatttccataagctcttcaaaatagcctatgaaaacagctt 16322852  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 4700079 - 4700144
Alignment:
Q  132 agttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatac 197  Q
    ||||| ||| ||||||||||||||||||||  |   |||||||||||||||| || ||||||||||    
T  4700079 agttgttttcagcttattttcataagctctccaggatagtttataaaaacagtttatagcttatac 4700144  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 33546480 - 33546541
Alignment:
Q  146 tattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    ||||||||||||||||| || |||| ||||||||||| |||  ||| |||||||||| ||||    
T  33546480 tattttcataagctcttcaatctagcttataaaaacaacttagagcatatacaaaaagaatt 33546541  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 836347 - 836427
Alignment:
Q  127 tcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    |||||||||| |||||||| |||||||| || | | | || ||| ||||||||| | ||| ||||||||||||||| ||||    
T  836347 tcataagttgtttttagctcattttcattagttttcttaaatagcttataaaaataacttatagcttatacaaaaacaatt 836427  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 16981926 - 16981978
Alignment:
Q  109 aaatagtttaggacatcttcataagttggttttagcttattttcataagctct 161  Q
    |||||||||| ||||| | ||||||||| |||||||||||||  |||||||||    
T  16981926 aaatagtttatgacatgtccataagttgtttttagcttatttatataagctct 16981978  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 20713741 - 20713681
Alignment:
Q  104 tgtgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctcttta 164  Q
    |||| |||||| ||| ||||| | |||||| || ||||| |||||||||||||||||||||    
T  20713741 tgtggaaatagcttacgacatgtccataagctgtttttatcttattttcataagctcttta 20713681  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 38170677 - 38170780
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagttt--ataaaaacagcttgtagcttatacaaaaat 203  Q
    |||||| || ||| ||||| ||||||||||| ||| ||||| ||||| ||||||||| ||| ||| ||  | |||||||  || |||||||||| |||||    
T  38170677 tgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaagctcttcaaattagcttacaaaaaaacaatttatagcttatacgaaaat 38170776  T
Q  204 aatt 207  Q
    ||||    
T  38170777 aatt 38170780  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 39236496 - 39236583
Alignment:
Q  120 gacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    ||||| ||||||||||| |||||||||||||| ||||||| |||||  |||||||| |||||| ||| | | ||||| ||||||||||    
T  39236496 gacatattcataagttgtttttagcttatttttataagctttttaagatagtttattaaaacaacttattgtttatataaaaataatt 39236583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 43717123 - 43717177
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctc 160  Q
    |||||| || ||||||||| |||||| |||| ||| |||||||||||||||||||    
T  43717123 tgaaaacagcttaggacattttcataggttgttttcagcttattttcataagctc 43717177  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 1899992 - 1899923
Alignment:
Q  138 ttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    |||||||||||||| |||| ||||||| | |||||||| ||||||  || |||||||||| |||| ||||    
T  1899992 ttttagcttatttttataaactctttagaatagtttatgaaaacattttatagcttatacgaaaacaatt 1899923  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 7103491 - 7103560
Alignment:
Q  128 cataagttggttttagcttattttcataagctctttaaactagtttat-aaaaacagcttgtagcttata 196  Q
    ||||||||| |||||||||||||||| || |||| |||  ||| |||| ||||||||||| |||||||||    
T  7103491 cataagttgtttttagcttattttcacaaactctctaagatagcttatgaaaaacagcttatagcttata 7103560  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 12313180 - 12313261
Alignment:
Q  126 ttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    ||||||||||| ||| | ||||||||||||||||||  ||  ||| ||||  |||||  |||||||||| ||||||||||||    
T  12313180 ttcataagttgatttcaccttattttcataagctctccaagatagcttatgtaaacaatttgtagcttaaacaaaaataatt 12313261  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 17258870 - 17258950
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagctt 186  Q
    ||||||||| ||| ||||| |||||||| || ||| ||||||||||||||||||||| |   |||||||| ||||||||||    
T  17258870 tgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagctt 17258950  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Original strand, 41981872 - 41981948
Alignment:
Q  126 ttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaa 202  Q
    |||||||| || ||||||||||||||| |||| |||  ||| |||||||| |||||||||| ||| |||||||||||    
T  41981872 ttcataagctgcttttagcttattttcgtaagttctcaaaaatagtttatgaaaacagcttatagtttatacaaaaa 41981948  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 2568741 - 2568645
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaa 202  Q
    |||||| || ||| ||||| ||||||||||  ||||||||||||||||| ||||||  |   ||| |||| |||||| ||| |||||||||| ||||    
T  2568741 tgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttatacgaaaa 2568645  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 6593346 - 6593290
Alignment:
Q  142 agcttattttcataagctctttaaactagtttataaaaacagcttgtagcttataca 198  Q
    |||||||||||||||||||| |||  ||| |||| |||||||||| |||| ||||||    
T  6593346 agcttattttcataagctctctaaggtagcttatcaaaacagcttatagcctataca 6593290  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 41225132 - 41225088
Alignment:
Q  109 aaatagtttaggacatcttcataagttggttttagcttattttca 153  Q
    |||||||||  ||||| |||||||| |||||||||||||||||||    
T  41225132 aaatagtttgtgacatgttcataagctggttttagcttattttca 41225088  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 3155650 - 3155585
Alignment:
Q  142 agcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    ||||||||||||| || |||| ||  |||||||| ||||||||||||||||| |||||||| ||||    
T  3155650 agcttattttcattagttcttcaagatagtttatgaaaacagcttgtagcttgtacaaaaacaatt 3155585  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 25332838 - 25332756
Alignment:
Q  126 ttcataagttggttttagcttattttcataagctct-ttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    ||||||||||| ||| |||||||||||||||| |||  |||  ||| ||||||||| |||||  |||||||||||||| ||||    
T  25332838 ttcataagttgttttcagcttattttcataagttctgataagatagcttataaaaatagcttagagcttatacaaaaacaatt 25332756  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 53294137 - 53294202
Alignment:
Q  142 agcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    ||||| |||||||||| ||| |||  ||||||||||||||| ||| |||| |||||||||| ||||    
T  53294137 agcttgttttcataagttctctaatatagtttataaaaacaacttatagcatatacaaaaacaatt 53294202  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 20105453 - 20105497
Alignment:
Q  142 agcttattttcataagctctttaaactagtttataaaaacagctt 186  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||    
T  20105453 agcttatttacataagctcttcagaatagtttataaaaacagctt 20105497  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 33534178 - 33534246
Alignment:
Q  128 cataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttata 196  Q
    ||||||||| ||| ||||||||||||||||||||  ||| || ||||  |||||| ||||||| |||||    
T  33534178 cataagttgttttcagcttattttcataagctctcaaaaataatttacgaaaacaacttgtagattata 33534246  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 55084483 - 55084523
Alignment:
Q  121 acatcttcataagttggttttagcttattttcataagctct 161  Q
    |||| |||||||| |||||| ||||||||||||||||||||    
T  55084483 acatgttcataagctggtttcagcttattttcataagctct 55084523  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 753052 - 752956
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaa 202  Q
    |||||| |||||| ||||| |  ||||| || |||||||| ||||||||| ||||   ||  |||||||| |||||||||| |||||||||||||||    
T  753052 tgaaaacagtttatgacatatcaataagctgtttttagctaattttcatatgctccccaagatagtttatcaaaacagcttatagcttatacaaaaa 752956  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 39907850 - 39907778
Alignment:
Q  142 agcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataattaaacctt 214  Q
    ||||||||||||| || ||| |||  |||||||| ||||||| || ||||||||||||||| |||| ||||||    
T  39907850 agcttattttcattagttctctaagatagtttatgaaaacagtttatagcttatacaaaaacaatttaacctt 39907778  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 12110411 - 12110342
Alignment:
Q  138 ttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    |||||| ||||||||||||| |||| ||  ||| |||| |||||||||| |||||||||| |||| ||||    
T  12110411 ttttagattattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaatt 12110342  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 43694589 - 43694658
Alignment:
Q  138 ttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataatt 207  Q
    |||| ||||||||||||||| ||||  |  ||| ||||||||||||||| |||| |||||||||| ||||    
T  43694589 tttttgcttattttcataagttcttcgatatagcttataaaaacagcttatagcatatacaaaaacaatt 43694658  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 15075094 - 15075170
Alignment:
Q  128 cataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaata 204  Q
    |||||| || ||||||||||||| |||||||||| |||  |||||||| |||| | ||| || |||||| |||||||    
T  15075094 cataagctgtttttagcttatttccataagctctctaaggtagtttatgaaaataacttataacttatataaaaata 15075170  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 33708432 - 33708484
Alignment:
Q  108 aaaatagtttaggacatcttcataagttggttttagcttattttcataagctc 160  Q
    ||||||||||| || || ||||||||||| ||||||||||| || ||||||||    
T  33708432 aaaatagtttatgatattttcataagttgcttttagcttatctttataagctc 33708484  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 24785334 - 24785290
Alignment:
Q  116 ttaggacatcttcataagttggttttagcttattttcataagctc 160  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||    
T  24785334 ttaggacattttcataagttgtttttagtttattttcataagctc 24785290  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 30443940 - 30443881
Alignment:
Q  142 agcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaa 201  Q
    |||||||||||||||| |||  ||  ||||||||||||||||||| |||| |||||||||    
T  30443940 agcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaa 30443881  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 40122740 - 40122827
Alignment:
Q  106 tgaaaatagtttaggacatcttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagctt 193  Q
    ||||||||||||| |||||||  |||||||| ||||||||||||| ||| | || ||||   ||| ||||||||||| ||| ||||||    
T  40122740 tgaaaatagtttatgacatctctataagttgtttttagcttatttccattaactttttaggatagcttataaaaacaacttatagctt 40122827  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 24785283 - 24785233
Alignment:
Q  111 atagtttaggacatcttcataagttggttttagcttattttcataagctct 161  Q
    |||| ||| ||||| ||||||||||| ||||||||||||| ||||||||||    
T  24785283 atagcttatgacatgttcataagttgtttttagcttatttacataagctct 24785233  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 28622005 - 28622082
Alignment:
Q  125 cttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaa 202  Q
    ||||||||| || ||| || ||||||||||||| |||  ||  |||||||| |||||||||| ||||||| |||||||    
T  28622005 cttcataagctgttttcaggttattttcataagttctcgaagatagtttatgaaaacagcttatagcttacacaaaaa 28622082  T

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Target: scaffold0091 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 7004 - 6945
Alignment:
Q  137 gttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttata 196  Q
    |||||||||||||||||||||||||| |   ||| ||| ||||||||||| |||||||||    
T  7004 gttttagcttattttcataagctcttcatgatagcttacaaaaacagcttatagcttata 6945  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 9109258 - 9109333
Alignment:
Q  126 ttcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaa 201  Q
    ||||||||||| ||| | |||||||||||| | |||  ||| ||||| || |||||||||| ||||||||||||||    
T  9109258 ttcataagttgttttcaccttattttcataggttctccaaattagttaatgaaaacagcttatagcttatacaaaa 9109333  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 157
Target Start/End: Complemental strand, 33737805 - 33737774
Alignment:
Q  126 ttcataagttggttttagcttattttcataag 157  Q
    ||||||||||||||||||||||||||||||||    
T  33737805 ttcataagttggttttagcttattttcataag 33737774  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 28641751 - 28641791
Alignment:
Q  121 acatcttcataagttggttttagcttattttcataagctct 161  Q
    |||| |||||||| || ||||||||||||||||||||||||    
T  28641751 acatgttcataagctgtttttagcttattttcataagctct 28641791  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 35070475 - 35070559
Alignment:
Q  127 tcataagttggttttagcttattttcataagctctttaaactagtttataaaaacagcttgtagcttatacaaaaataattaaac 211  Q
    ||||||| || ||| | ||||||||||||||||||  ||  ||| ||| ||||||||||| || ||| |||||||| ||||||||    
T  35070475 tcataagctgttttcaacttattttcataagctctcaaacatagcttacaaaaacagcttataacttgtacaaaaacaattaaac 35070559  T

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