View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10061_low_8 (Length: 334)
Name: NF10061_low_8
Description: NF10061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10061_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 127 - 323
Target Start/End: Complemental strand, 35928787 - 35928591
Alignment:
| Q |
127 |
ccttgaaaacacaacatgacatcagaagaaatgatataatatttctatcaaaatatagaaaggaatgatatattattagttaatattttgattgatgaca |
226 |
Q |
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| T |
35928787 |
ccttgaaaacacaacatgacatcagaagaaatgatatattatttctatcaaaataaagaaaggaatgatatattattagttaatattttgattgatgaca |
35928688 |
T |
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| Q |
227 |
taacttgattttcatagtagtcaaacatggtagggtagcacatttttacataagaacaaaatattattttcatattgaaaatgaaagaacatagtga |
323 |
Q |
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| T |
35928687 |
taacttgattttcatagtagtcaaacatggtagggtagcacatttttacataagaacaaaatattatttttatattgaaaatgaaagaacatagtga |
35928591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 35915725 - 35915684
Alignment:
| Q |
213 |
tttgattgatgacataacttgattttcatagtagtcaaacat |
254 |
Q |
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| T |
35915725 |
tttgattgatgacataactacattttcatagtagtgaaacat |
35915684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 35922085 - 35922044
Alignment:
| Q |
214 |
ttgattgatgacataacttgattttcatagtagtcaaacatg |
255 |
Q |
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| T |
35922085 |
ttgattgatgacataagttcattttcatagtagtgaaacatg |
35922044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 35940852 - 35940804
Alignment:
| Q |
198 |
attattagttaatattttgattgatgacataacttgattttcatagtagt |
247 |
Q |
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| T |
35940852 |
attatcagttaatattt-gattgatgacataacttcatattcatagtagt |
35940804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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