View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10062_high_1 (Length: 731)

Name: NF10062_high_1
Description: NF10062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10062_high_1
NF10062_high_1
[»] chr5 (16 HSPs)
chr5 (13-495)||(5847958-5848440)
chr5 (491-715)||(5847705-5847929)
chr5 (13-52)||(34272940-34272979)
chr5 (15-49)||(14749000-14749034)
chr5 (13-55)||(20318905-20318947)
chr5 (15-52)||(27998343-27998380)
chr5 (15-52)||(28186993-28187030)
chr5 (13-52)||(1275183-1275222)
chr5 (13-52)||(1287914-1287953)
chr5 (13-52)||(10639215-10639254)
chr5 (13-52)||(24178428-24178467)
chr5 (13-51)||(11002747-11002785)
chr5 (132-206)||(14667827-14667901)
chr5 (18-70)||(21952274-21952327)
chr5 (66-118)||(31636181-31636234)
chr5 (19-52)||(43558139-43558172)
[»] chr7 (19 HSPs)
chr7 (238-484)||(7279022-7279280)
chr7 (238-484)||(7374559-7374817)
chr7 (13-52)||(14593679-14593718)
chr7 (13-52)||(16013202-16013241)
chr7 (13-52)||(36514530-36514569)
chr7 (13-70)||(1740715-1740773)
chr7 (158-207)||(6420641-6420690)
chr7 (13-68)||(11593878-11593934)
chr7 (13-52)||(5335840-5335879)
chr7 (13-52)||(31005141-31005180)
chr7 (13-52)||(33350131-33350170)
chr7 (13-52)||(35906526-35906565)
chr7 (13-52)||(37617862-37617901)
chr7 (13-70)||(30200265-30200323)
chr7 (13-55)||(36869611-36869653)
chr7 (493-534)||(24777191-24777232)
chr7 (17-70)||(28542190-28542243)
chr7 (15-52)||(36651914-36651951)
chr7 (14-70)||(40139222-40139279)
[»] chr3 (9 HSPs)
chr3 (13-52)||(42510336-42510375)
chr3 (17-52)||(2341039-2341074)
chr3 (13-52)||(33272353-33272392)
chr3 (17-52)||(46431996-46432031)
chr3 (13-52)||(47542037-47542076)
chr3 (13-52)||(51448034-51448073)
chr3 (13-52)||(52138718-52138757)
chr3 (16-50)||(11581365-11581399)
chr3 (20-68)||(19676398-19676447)
[»] chr2 (7 HSPs)
chr2 (13-70)||(9647911-9647969)
chr2 (13-70)||(42092437-42092495)
chr2 (13-52)||(7825276-7825315)
chr2 (13-52)||(36183369-36183408)
chr2 (17-52)||(45077670-45077705)
chr2 (17-70)||(16097296-16097350)
chr2 (18-55)||(19527860-19527897)
[»] chr4 (11 HSPs)
chr4 (16-52)||(54470128-54470164)
chr4 (13-70)||(17900398-17900456)
chr4 (19-70)||(2588905-2588957)
chr4 (13-48)||(11389638-11389673)
chr4 (13-52)||(12494668-12494707)
chr4 (13-52)||(31960139-31960178)
chr4 (13-52)||(33709837-33709876)
chr4 (13-52)||(48622866-48622905)
chr4 (13-52)||(56375208-56375247)
chr4 (13-70)||(44860772-44860830)
chr4 (158-223)||(54934982-54935047)
[»] chr1 (7 HSPs)
chr1 (13-52)||(26016355-26016394)
chr1 (13-52)||(1210663-1210702)
chr1 (13-52)||(9592652-9592691)
chr1 (13-52)||(30202455-30202494)
chr1 (13-52)||(43240706-43240745)
chr1 (13-52)||(51441090-51441129)
chr1 (161-207)||(50846650-50846696)
[»] chr8 (10 HSPs)
chr8 (13-51)||(30456537-30456575)
chr8 (18-70)||(29520583-29520636)
chr8 (15-70)||(13171955-13172011)
chr8 (13-52)||(36395275-36395314)
chr8 (13-52)||(39946775-39946814)
chr8 (14-48)||(78952-78986)
chr8 (18-52)||(44681401-44681435)
chr8 (19-52)||(2518716-2518749)
chr8 (22-70)||(36069570-36069619)
chr8 (13-50)||(39953591-39953628)
[»] scaffold0570 (1 HSPs)
scaffold0570 (13-52)||(2595-2634)
[»] chr6 (2 HSPs)
chr6 (13-52)||(28085294-28085333)
chr6 (13-52)||(33998329-33998368)


Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 495
Target Start/End: Complemental strand, 5848440 - 5847958
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactggagggataagattagaattagaaatgacagcatttgagaaagttgggtagcatttatag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5848440 agcagagatgaggatgttgcattggatgtgtggtaagactggagggataagattagaattagaaatgacagcatttgagaaatttgggtagcatttatag 5848341  T
Q  113 tagaaactcaacttaggtgtgtagatagaagacatgcatattatttagttaggagagtagatcaaatgaatgataatcaaatcactagaggcagatgatg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5848340 tagaaactcaacttaggtgtgtagatagaagacatgcatattatttagtttggagagtagatcaaatgaatgataatcaaatcactagaggcagatgatg 5848241  T
Q  213 acgtagaaaaatcataagaatcaaataacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctccttttcat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5848240 acgtagaaaaatcataagaatcaaataacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctccttttcat 5848141  T
Q  313 catcttcacagtttctttatcattcactttcttccaactccaccttgatcttcaacatcttcttcaaactcttcctcacaagaaaacctcttgcaaactt 412  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5848140 catcttcacagtttctttatcattcactttcttccggctccaccttgatcttcaacatcttcttcaaactcttcctcacaagaaaacctcttgcaaactt 5848041  T
Q  413 ctcaatcttcattgctgagtcggctctgtttctctctgatcccatggaatgaataggaattgaaatcaccttggacggtgttt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5848040 ctcaatcttcattgctgagtcggctctgtttctctctgatcccatggaatgaataggaattgaaaccaccttggacggtgttt 5847958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 491 - 715
Target Start/End: Complemental strand, 5847929 - 5847705
Alignment:
Q  491 tgtttgattcatgtagtcgatcctattttgtgggataaagcttgatcattgttgttataattttgtaatctaactgttatgatttattgttataatggat 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5847929 tgtttgattcatgtagtcgatcctattttgtgggataaagcttgatcattgttgttataattttgtaatctaactgttatgatttattgttataatggat 5847830  T
Q  591 taatggtgcatatgaattaaattcttatttatgacataacattcttttgatatatattcttagatgttagatattttgtttctttaccnnnnnnnttgga 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  5847829 taatggtgcatatgaattaaattcttatttatgacataacattcttttgatatatattcttagatgttagatattttgtttctttaccaaaaaaattgga 5847730  T
Q  691 agaaatcagtttgtgcagttctttt 715  Q
    |||||||||||||||||||||||||    
T  5847729 agaaatcagtttgtgcagttctttt 5847705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 34272940 - 34272979
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  34272940 agcagagatgaggatgttgcattggatgagtggtaagact 34272979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 14749000 - 14749034
Alignment:
Q  15 cagagatgaggatgttgcattggatgtgtggtaag 49  Q
    |||||||||||||||||||||||||||||||||||    
T  14749000 cagagatgaggatgttgcattggatgtgtggtaag 14749034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 20318905 - 20318947
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga 55  Q
    |||||||||||||||||||| ||||||| ||||||||||||||    
T  20318905 agcagagatgaggatgttgcgttggatgagtggtaagactgga 20318947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 27998343 - 27998380
Alignment:
Q  15 cagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||| |||||||||||||||||||    
T  27998343 cagagatgaggatgttgcgttggatgtgtggtaagact 27998380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 28187030 - 28186993
Alignment:
Q  15 cagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||| |||||||||||||||||||||||||||    
T  28187030 cagagatgagaatgttgcattggatgtgtggtaagact 28186993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 1275183 - 1275222
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  1275183 agcagagatgaggatgttgcgttggatgagtggtaagact 1275222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 1287953 - 1287914
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  1287953 agcagagatgaggatgttgcgttggatgagtggtaagact 1287914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 10639215 - 10639254
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  10639215 agcagagatgaggatgttgcgttggatgagtggtaagact 10639254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 24178428 - 24178467
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  24178428 agcagagatgaggatgttgcgttggatgagtggtaagact 24178467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 11002785 - 11002747
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagac 51  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  11002785 agcagagatgaggatgttgcgctggatgtgtggtaagac 11002747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 14667827 - 14667901
Alignment:
Q  132 tgtagatagaagacatgcatattatttagttaggagagtagatcaaatgaatgataatcaaatcactagaggcag 206  Q
    |||||| |||||||||| | ||||| |||| |||||||||||||| ||| || ||| | | ||||||||||||||    
T  14667827 tgtagagagaagacatgtacattatgtagtaaggagagtagatcagatggattatagttatatcactagaggcag 14667901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 21952274 - 21952327
Alignment:
Q  18 agatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    ||||||||||||||| ||| ||||||||||||||| || | |||||||||||||    
T  21952274 agatgaggatgttgcgttgcatgtgtggtaagactagacgagataagattagaa 21952327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 31636234 - 31636181
Alignment:
Q  66 tagaattagaaatgacagcatttgagaaagtt-gggtagcatttatagtagaaa 118  Q
    |||||||| ||||||||||||| ||||||||| ||||||||  |||||||||||    
T  31636234 tagaattataaatgacagcattagagaaagttggggtagcacctatagtagaaa 31636181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 43558172 - 43558139
Alignment:
Q  19 gatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||| |||||||||||||||||||    
T  43558172 gatgaggatgttgcgttggatgtgtggtaagact 43558139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 9e-69; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 238 - 484
Target Start/End: Original strand, 7279022 - 7279280
Alignment:
Q  238 taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctcctttt-catcatcttcacagtttctttatcatt 336  Q
    ||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  7279022 taacagaatccaacctaagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttcttcatcatt 7279121  T
Q  337 cactttcttc-----------caactccaccttgatcttcaacatcttcttcaaactcttcctcacaagaaaacctcttgcaaacttctcaatcttcatt 425  Q
    ||| ||||||           ||||||||| || |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||    
T  7279122 caccttcttctcaatctcatccaactccactttcatcttcaacatcttgttcaaactcttcctcacaagaaaccctcttgcaaccttctcaatcttcgtt 7279221  T
Q  426 gctgagtcggctctgtttctctctgatcccatggaatgaataggaattgaaatcacctt 484  Q
    ||||| | |||| |||||||||||||||||| | ||||||  |||||||||| ||||||    
T  7279222 gctgaattggctttgtttctctctgatcccacgaaatgaaccggaattgaaaccacctt 7279280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 238 - 484
Target Start/End: Complemental strand, 7374817 - 7374559
Alignment:
Q  238 taacagaatccaacctaagaagcaaattcatgatggttttagtgatccttatcctctctttttgctcctttt-catcatcttcacagtttctttatcatt 336  Q
    ||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  7374817 taacagaatccaacctaagaagcaaattcataattgtttcagcgatccttatcctctctttttgctcctttttcatcatcttcacagtttcttcatcatt 7374718  T
Q  337 cactttcttc-----------caactccaccttgatcttcaacatcttcttcaaactcttcctcacaagaaaacctcttgcaaacttctcaatcttcatt 425  Q
    ||| ||||||           |||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||    
T  7374717 caccttcttctcaatctcatccaactctaccttcatcttcaacatcttgttcaaactcttcctcacaagaaaccctcttgcaaccttctcaatcttcgtt 7374618  T
Q  426 gctgagtcggctctgtttctctctgatcccatggaatgaataggaattgaaatcacctt 484  Q
    ||||| | |||| |||||||||||||||||| | ||||||  |||||||||| ||||||    
T  7374617 gctgaattggctttgtttctctctgatcccacgaaatgaaccggaattgaaaccacctt 7374559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 14593679 - 14593718
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  14593679 agcagagatgaggatgttgcgttggatgtgtggtaagact 14593718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 16013202 - 16013241
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  16013202 agcagagatgaggatgttgcgttggatgtgtggtaagact 16013241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 36514569 - 36514530
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  36514569 agcagagatgaggatgttgcgttggatgtgtggtaagact 36514530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 1740715 - 1740773
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact-ggagggataagattagaa 70  Q
    |||||||||||||||||||| |||||||||| |||||||| || ||| |||||||||||    
T  1740715 agcagagatgaggatgttgcgttggatgtgtagtaagactaggtggggtaagattagaa 1740773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 6420690 - 6420641
Alignment:
Q  158 tagttaggagagtagatcaaatgaatgataatcaaatcactagaggcaga 207  Q
    |||| |||||||||||||| |||||||||| ||| |||||||||||||||    
T  6420690 tagtaaggagagtagatcagatgaatgatagtcagatcactagaggcaga 6420641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 11593878 - 11593934
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattag 68  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||  ||||||||||||    
T  11593878 agcagagatgaggatgttgcgttggatgagtggtaagactagacaggataagattag 11593934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 5335840 - 5335879
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  5335840 agcagagatgaggatgttgcgttgaatgtgtggtaagact 5335879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 31005141 - 31005180
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  31005141 agcagagatgaggatgttgcgttggatgagtggtaagact 31005180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 33350170 - 33350131
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  33350170 agcagagatgaggatgttgccttggatgagtggtaagact 33350131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 35906565 - 35906526
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  35906565 agcagagatgaggatgttgcgttggatgagtggtaagact 35906526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 37617862 - 37617901
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  37617862 agcagagatgaggatgttgcgttggatgagtggtaagact 37617901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 30200323 - 30200265
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    |||||||||||||||||||  ||||||||||||||||| | || |||||| ||||||||    
T  30200323 agcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaa 30200265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 36869653 - 36869611
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga 55  Q
    |||||||||||||||||||  ||||||| ||||||||||||||    
T  36869653 agcagagatgaggatgttgtgttggatgagtggtaagactgga 36869611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 534
Target Start/End: Original strand, 24777191 - 24777232
Alignment:
Q  493 tttgattcatgtagtcgatcctattttgtgggataaagcttg 534  Q
    |||||||||||||| |||||||| || |||||||||||||||    
T  24777191 tttgattcatgtagccgatcctacttagtgggataaagcttg 24777232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 28542243 - 28542190
Alignment:
Q  17 gagatgaggatgttgcattggatgtgtggtaagactggagggataagattagaa 70  Q
    ||||||||| |||||| ||||||||||||||||||| | ||||||  |||||||    
T  28542243 gagatgagggtgttgcgttggatgtgtggtaagactagtgggatagaattagaa 28542190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 36651914 - 36651951
Alignment:
Q  15 cagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||| ||||||| |||||||||||    
T  36651914 cagagatgaggatgttgcgttggatgagtggtaagact 36651951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 40139279 - 40139222
Alignment:
Q  14 gcagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    ||||||| ||||||||||  | ||||||||||||||||| || |||||||||||||||    
T  40139279 gcagagacgaggatgttgtgtgggatgtgtggtaagactagacgggataagattagaa 40139222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 42510375 - 42510336
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42510375 agcagagatgaggatgttgcattggatgtgtggtaagact 42510336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 2341074 - 2341039
Alignment:
Q  17 gagatgaggatgttgcattggatgtgtggtaagact 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  2341074 gagatgaggatgttgcattggatgtgtggtaagact 2341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 33272392 - 33272353
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  33272392 agcagagatgaggatgttgcattggatgagtggtaagact 33272353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 46432031 - 46431996
Alignment:
Q  17 gagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||| |||||||||||||||||||||||||||||    
T  46432031 gagatggggatgttgcattggatgtgtggtaagact 46431996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 47542076 - 47542037
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  47542076 agcagagatgaggatgttgcgttggatgagtggtaagact 47542037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 51448073 - 51448034
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  51448073 agcagagatgaggatgttgcgttggatgagtggtaagact 51448034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 52138718 - 52138757
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  52138718 agcagagatgaggatgttgcgttggatgagtggtaagact 52138757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 11581365 - 11581399
Alignment:
Q  16 agagatgaggatgttgcattggatgtgtggtaaga 50  Q
    |||||||||||||||||||||||||||| ||||||    
T  11581365 agagatgaggatgttgcattggatgtgtagtaaga 11581399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 19676447 - 19676398
Alignment:
Q  20 atgaggatgttgcattggatgtgtggtaagactgga-gggataagattag 68  Q
    ||||||||||||||||||||| | ||||||||| || |||||||||||||    
T  19676447 atgaggatgttgcattggatgagcggtaagactagatgggataagattag 19676398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 9647969 - 9647911
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    |||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  9647969 agcagagatgaggatgttgcgttggatgtgtggtaagactagatgtgataagattagaa 9647911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 42092437 - 42092495
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    ||||||||||| ||||||||||||||||||| |||||||| || |||||| ||||||||    
T  42092437 agcagagatgatgatgttgcattggatgtgtagtaagactagacgggatatgattagaa 42092495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 7825276 - 7825315
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  7825276 agcagagattaggatgttgcgttggatgtgtggtaagact 7825315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 36183369 - 36183408
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  36183369 agcagagatgaggatgttgcgttggatgagtggtaagact 36183408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 45077670 - 45077705
Alignment:
Q  17 gagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||| |||||||||||||||||||    
T  45077670 gagatgaggatgttgcgttggatgtgtggtaagact 45077705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 16097350 - 16097296
Alignment:
Q  17 gagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    ||||||||||||||||| |||||| ||||||||||| || |||||| ||||||||    
T  16097350 gagatgaggatgttgcactggatgagtggtaagactagatgggatatgattagaa 16097296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 19527897 - 19527860
Alignment:
Q  18 agatgaggatgttgcattggatgtgtggtaagactgga 55  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  19527897 agatgaggatgttgcgttggatgtgtggcaagactgga 19527860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 54470128 - 54470164
Alignment:
Q  16 agagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||||||||||||||||||||    
T  54470128 agagatgaggatgttgcattggatgtgtggtaagact 54470164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 17900398 - 17900456
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    |||||| ||||||||||||| ||||||||||||||||||| || ||||||| |||||||    
T  17900398 agcagaaatgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaa 17900456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 2588905 - 2588957
Alignment:
Q  19 gatgaggatgttgcattggatgtgtggtaagact-ggagggataagattagaa 70  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| ||||||||    
T  2588905 gatgaggatgttgcgttggatgtgtggtaagactagaagggataggattagaa 2588957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 11389638 - 11389673
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaa 48  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11389638 agcagagatgaggatgttggattggatgtgtggtaa 11389673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 12494668 - 12494707
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  12494668 agcagagatgaggatgttgcgttggatgagtggtaagact 12494707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 31960178 - 31960139
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  31960178 agcagagatgaggatgttgcgttggatgagtggtaagact 31960139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 33709837 - 33709876
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  33709837 agcagagatgatgatgttgcgttggatgtgtggtaagact 33709876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 48622905 - 48622866
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  48622905 agcagagatgaggatgttgctttggatgagtggtaagact 48622866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 56375208 - 56375247
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  56375208 agcagagatgaggatgttgcgttggatgagtggtaagact 56375247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 44860772 - 44860830
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    |||||| ||||||||||||  ||||||||||||||||||| || || ||||||||||||    
T  44860772 agcagaaatgaggatgttgtgttggatgtgtggtaagactagatggaataagattagaa 44860830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 54934982 - 54935047
Alignment:
Q  158 tagttaggagagtagatcaaatgaatgataatcaaatcactagaggcagatgatgacgtagaaaaa 223  Q
    |||| |||||||||||||||| | |||||| | | |||||||||||||||||| ||| || |||||    
T  54934982 tagtgaggagagtagatcaaaaggatgatagttagatcactagaggcagatgaagacctaaaaaaa 54935047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 26016355 - 26016394
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  26016355 agcagagatgaggatgttgcgttggatgtgtggtaagact 26016394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 1210663 - 1210702
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  1210663 agcagagatgaggatgttgcgttggatgagtggtaagact 1210702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 9592652 - 9592691
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  9592652 agcagagatgaggatgttgcgttggatgagtggtaagact 9592691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 30202494 - 30202455
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  30202494 agcagagatgaggatgttgcgttggatgagtggtaagact 30202455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 43240745 - 43240706
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  43240745 agcagagatgaggatgttgcgttggatgagtggtaagact 43240706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 51441129 - 51441090
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  51441129 agcagagatgaggatgttgcattggacgagtggtaagact 51441090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 50846650 - 50846696
Alignment:
Q  161 ttaggagagtagatcaaatgaatgataatcaaatcactagaggcaga 207  Q
    |||||||||||||||| ||| | |||||||| |||||||||||||||    
T  50846650 ttaggagagtagatcagatggaggataatcatatcactagaggcaga 50846696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 30456575 - 30456537
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagac 51  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  30456575 agcagagatgaggatgttgcgttggatgtgtggtaagac 30456537  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 29520583 - 29520636
Alignment:
Q  18 agatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    ||||||||||||||| ||||||||||||||||||| || |||||| ||||||||    
T  29520583 agatgaggatgttgcgttggatgtgtggtaagactagatgggataggattagaa 29520636  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 13172011 - 13171955
Alignment:
Q  15 cagagatgaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    |||||||||| |||||||||||||||||| |||||||| || |||||| ||||||||    
T  13172011 cagagatgagaatgttgcattggatgtgtagtaagactagacgggataggattagaa 13171955  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 36395314 - 36395275
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  36395314 agcagagatgaggatgttgcgttggatgagtggtaagact 36395275  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 39946775 - 39946814
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  39946775 agcagagatgaggatgttgcgttggatgagtggtaagact 39946814  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 78952 - 78986
Alignment:
Q  14 gcagagatgaggatgttgcattggatgtgtggtaa 48  Q
    |||||||||||||||||||| ||||||||||||||    
T  78952 gcagagatgaggatgttgcagtggatgtgtggtaa 78986  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 44681435 - 44681401
Alignment:
Q  18 agatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||| ||||||||||||||||||||    
T  44681435 agatgaggatgttgtattggatgtgtggtaagact 44681401  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 2518749 - 2518716
Alignment:
Q  19 gatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||| |||||||||||||||||||||||||||    
T  2518749 gatgagaatgttgcattggatgtgtggtaagact 2518716  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 36069570 - 36069619
Alignment:
Q  22 gaggatgttgcattggatgtgtggtaagactgga-gggataagattagaa 70  Q
    ||||||||||  ||||||||||||||||||| || |||||||||||||||    
T  36069570 gaggatgttgtgttggatgtgtggtaagactagacgggataagattagaa 36069619  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 39953628 - 39953591
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaaga 50  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  39953628 agcagagatgagaatgttgcgttggatgtgtggtaaga 39953591  T

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Target: scaffold0570 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 2634 - 2595
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  2634 agcagagatgaggatgtttcattggatgagtggtaagact 2595  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 28085294 - 28085333
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  28085294 agcagagatgaggatgttgcgttggatgagtggtaagact 28085333  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 33998368 - 33998329
Alignment:
Q  13 agcagagatgaggatgttgcattggatgtgtggtaagact 52  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  33998368 agcagagatgaagatgttgcgttggatgtgtggtaagact 33998329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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