View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10062_low_3 (Length: 250)
Name: NF10062_low_3
Description: NF10062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10062_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 8285516 - 8285762
Alignment:
| Q |
1 |
ttcgtttaattatatcccttagacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttgtctgt |
100 |
Q |
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| T |
8285516 |
ttcgtttaattatatcccttagacgtgtgcaatgtgcatgatttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttatttgt |
8285615 |
T |
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| Q |
101 |
gtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattcaaggttgatgtggggccctttaacgttcgt |
200 |
Q |
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| T |
8285616 |
gtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtatggtgattactaaggacgccgcattcaaggttgatgcagggccctttaacgttcgt |
8285715 |
T |
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| Q |
201 |
gcatcctttggagatagagcagttctctttgactcctatgctactcc |
247 |
Q |
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| T |
8285716 |
gcatcctttggagatagagcagttctctttgactcctctggtactcc |
8285762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 34697277 - 34697492
Alignment:
| Q |
22 |
gacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgt |
121 |
Q |
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| T |
34697277 |
gacgtgtgcaatgttcatggcttcatttggttgatgtttgtgctttcgagttgcatatgactcataaattgttgtatgtgtgtttctcaggttttagtga |
34697376 |
T |
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| Q |
122 |
ggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattcaaggttgatgtggggccctttaacgttcgtgcatcctttggagatagagca |
221 |
Q |
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| T |
34697377 |
ggacaatgttactgcaaaatgtagggtgattactatcgacggtgcattcgaagttaatgtggggccctttaacgttcgtaaattctttggcgatggagca |
34697476 |
T |
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| Q |
222 |
gttctctttgactcct |
237 |
Q |
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| T |
34697477 |
gttctgcttgactcct |
34697492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 34687526 - 34687580
Alignment:
| Q |
183 |
gggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcct |
237 |
Q |
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| T |
34687526 |
gggccctttaacgttcgtgaatcctttggtaatagagcagttctgtttgactcct |
34687580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 24968890 - 24969055
Alignment:
| Q |
70 |
agttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcatt |
169 |
Q |
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|||||||||| | ||||||||||||| ||||||||||||||| |||||| |||||||| || ||||| || | || ||||||| | |||| ||| |
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| T |
24968890 |
agttgcatattacagatgaattgttg--tgtgtgtttgtcaggttttggtaaggaagatggtacgacaaaatatagggtggttactaatggtgccgtatt |
24968987 |
T |
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| Q |
170 |
caaggttgatgtggggccctttaacgttcgtgcatcctttggagatagagcagttctctttgactcct |
237 |
Q |
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| T |
24968988 |
cgaggttcatgcagggtcctttaacgttcgtgaattgtttggtgatgaagcagttctatttgactcct |
24969055 |
T |
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