View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10063_low_2 (Length: 558)
Name: NF10063_low_2
Description: NF10063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10063_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 20 - 553
Target Start/End: Original strand, 6083149 - 6083682
Alignment:
| Q |
20 |
gaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatgatgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttg |
119 |
Q |
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| T |
6083149 |
gaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatgatgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttg |
6083248 |
T |
|
| Q |
120 |
ttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgat |
219 |
Q |
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| T |
6083249 |
ttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgat |
6083348 |
T |
|
| Q |
220 |
tgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatatttctctgatgtat |
319 |
Q |
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| T |
6083349 |
tgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatacttctctgatgtat |
6083448 |
T |
|
| Q |
320 |
gaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgaat |
419 |
Q |
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| T |
6083449 |
gaggctcgagtgcttcaaaaggaacttgatattcgaaatgaagtccaattttcaagagtaatgctttcgcaaacagcgtcaaaactgttgcaacttgagt |
6083548 |
T |
|
| Q |
420 |
ctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtga |
519 |
Q |
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| T |
6083549 |
ctgagattgattccaaaaaccaagtagcatcggagcagcctagaagtcatgttgcattgcaagagttatctttggcatcaatgtcttacattggcagtga |
6083648 |
T |
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| Q |
520 |
tgacaatgttagctgtggggagtcctttgcttct |
553 |
Q |
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| T |
6083649 |
tgacaatgttagctgcggggagtccttggcttct |
6083682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 39108257 - 39107915
Alignment:
| Q |
20 |
gaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatgatgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttg |
119 |
Q |
| |
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|||||||||| |||||| | |||||| |||| ||||||| |||||||||| |||||||||| ||||||| ||| ||||| || | | || | | |
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| T |
39108257 |
gaatgtatgcagcagttacgatttgttcgagaagaacaagggcaaaggattcatgatgctgtgatgaaggcttcaaaggaatttgaaaaggagtgcatgg |
39108158 |
T |
|
| Q |
120 |
ttttagaggagcagctatcagagaaaagtaaaaggcttgctaaaactgtgattgaaaattcttatcttaacaaatctattatcgcgaaagacaatttgat |
219 |
Q |
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||| ||||| ||| |||| | || |||||||||||| || ||| || || |||||||||| ||||||| | ||| ||| | | ||| || ||||| |
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| T |
39108157 |
tttgggaggatcagttatccgtgacaagtaaaaggctggcaaaagttgagactgaaaattctcatcttaatacatccatttttcaaagagaaaaattgat |
39108058 |
T |
|
| Q |
220 |
tgatgatctgagaagacaattgaatcaagcagacgtggatcgtaatgcattgatgattggattagagtctgttgagaaggataatatttctctgatgtat |
319 |
Q |
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||| ||||||| ||||||||||| |||||| || | |||| || |||| ||||| || |||||||||| |||||| |||||| |||||||| ||| |
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| T |
39108057 |
tgaggatctgaaaagacaattgactcaagctgaggcagatcatagtgcactgatggttagattagagtccactgagaaagataatgcttctctgacatat |
39107958 |
T |
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| Q |
320 |
gaggctcgagtgcttcaaaaggaacttgatattcgaaatgaag |
362 |
Q |
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|||| ||||| ||| ||||||| || || || |||||||||| |
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| T |
39107957 |
gaggtccgagtacttgaaaaggagctggagatccgaaatgaag |
39107915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 536
Target Start/End: Complemental strand, 39107438 - 39107390
Alignment:
| Q |
488 |
tctttggcatcaatgtcttacattggcagtgatgacaatgttagctgtg |
536 |
Q |
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| T |
39107438 |
tctttggcatcaacgtctgatattggcagtgatgacaaggttagctgtg |
39107390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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