View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10063_low_3 (Length: 250)
Name: NF10063_low_3
Description: NF10063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10063_low_3 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 17604705 - 17604472
Alignment:
| Q |
5 |
agatcgagagtaattactattgataagacaaatatagggagggaggacaaagtaaatagtgatgcctctattaaattaattgattcatcatggtagcgaa |
104 |
Q |
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| T |
17604705 |
agatcgagagtaattactattgatagggaaaatatagggagggaggacaaagtaaatagtgaggcttatattaaattaattgatttatcatggtagagaa |
17604606 |
T |
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| Q |
105 |
ggaaaacggcacacagaccgtactcaagcttcagatcaatgttcccataagcaaagagtatgcccgattgtttttaagagaacact--aaaagaaaacat |
202 |
Q |
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| T |
17604605 |
gaaaaacggcacatagaccgtactcgagcttcagatcaatgtccccataagcaaagagtatgcccgattgtttttaagagaaaactacaaaaaaaaacat |
17604506 |
T |
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| Q |
203 |
attcacctcgattagagaagaattgctttacgcc |
236 |
Q |
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| T |
17604505 |
attcacctcgattagagacgaattgctttacgcc |
17604472 |
T |
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Target: scaffold0082 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 14952 - 14764
Alignment:
| Q |
1 |
cttcagatcgagagtaattactattgataagacaaatatagggagggaggacaaagtaaatagtgatgcctctattaaattaattgattcatcatggtag |
100 |
Q |
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| T |
14952 |
cttcggatcgggagtaatcactagtgatagggcaaaaatagggaggaaggacaaaggaaagagcgatgcctacattaaatcaattgattcgtcatggtag |
14853 |
T |
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| Q |
101 |
cgaaggaaaacggcacacagaccgtactcaagcttcagatcaatgttcccataagcaaagagtatgcccgattgtttttaagagaacac |
189 |
Q |
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| T |
14852 |
agaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacac |
14764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 37882354 - 37882451
Alignment:
| Q |
92 |
tcatggtagcgaaggaaaacggcacacagaccgtactcaagcttcagatcaatgttcccataagcaaagagtatgcccgattgtttttaagagaacac |
189 |
Q |
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| T |
37882354 |
tcatggtagagaagaaaaacggcgcacggaccgtactcgagcttcggatcaatgtccccagaagcaaggagtacgcccgcgtgtttttaagagaacac |
37882451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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