View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10063_low_4 (Length: 249)
Name: NF10063_low_4
Description: NF10063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10063_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 50580498 - 50580262
Alignment:
| Q |
1 |
agacagagaaatcttcgacagtgttacatcggagttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaat |
100 |
Q |
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| T |
50580498 |
agacagagaaatcttcgacagtgttacatcggagttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaat |
50580399 |
T |
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| Q |
101 |
tgggtcatgcatgaataccgtattcactctaaatccagctttagaacaaacaaggtatgtagtataatatacaggcatagatttatgacaataattaagt |
200 |
Q |
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| T |
50580398 |
tgggtcatgcatgaataccgtattcactctaaatccacctttagaacaaacaaggtatgtagtataatatacaggcatagatttatgacaataattaagt |
50580299 |
T |
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| Q |
201 |
cgttaacttactgataatgtgtttgaattttacatct |
237 |
Q |
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| T |
50580298 |
cgttagcttactgataatgtgtttgaattttacatct |
50580262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 11462987 - 11462908
Alignment:
| Q |
38 |
gttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
117 |
Q |
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| T |
11462987 |
gttggaatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagagaaaagtaattgggtaatgcatgaata |
11462908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 1059313 - 1059453
Alignment:
| Q |
18 |
acagtgttacatcggagttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
117 |
Q |
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| T |
1059313 |
acagtgttacatcagaattagttggtatgaagaagactttggttttttacaaaggtcgggctcctagaggagagaaaaccaactgggttatgcatgaata |
1059412 |
T |
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| Q |
118 |
ccgtattcactctaaatccagctttagaacaaacaaggtat |
158 |
Q |
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| T |
1059413 |
ccgtatccattccaaatccagtattagaaccaacaaggtat |
1059453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 45058993 - 45059076
Alignment:
| Q |
34 |
gttggttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaata |
117 |
Q |
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| T |
45058993 |
gttggttggtatgaagaaaactcttgttttctacaaaggaagagcacctaaaggagaaaaaagtaattgggtcatgcatgaata |
45059076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 3893374 - 3893451
Alignment:
| Q |
39 |
ttggaatgaagaagacattggtcttttacaaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
116 |
Q |
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| T |
3893374 |
ttggaatgaagaaaacacttgttttctacaaaggaagagctcctaaaggtgaaaaaacaaattgggtcatgcatgaat |
3893451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 10317671 - 10317623
Alignment:
| Q |
68 |
aaaggcagagctcctcgaggagagaaaagtaattgggtcatgcatgaat |
116 |
Q |
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| T |
10317671 |
aaaggtagagctccaagaggagagaaaaccaattgggtcatgcatgaat |
10317623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 117
Target Start/End: Complemental strand, 31606050 - 31606022
Alignment:
| Q |
89 |
gagaaaagtaattgggtcatgcatgaata |
117 |
Q |
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| T |
31606050 |
gagaaaagtaattgggtcatgcatgaata |
31606022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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