View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10064_12 (Length: 318)

Name: NF10064_12
Description: NF10064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10064_12
NF10064_12
[»] chr5 (6 HSPs)
chr5 (235-318)||(36961667-36961751)
chr5 (99-186)||(36961471-36961558)
chr5 (27-103)||(36961354-36961430)
chr5 (242-303)||(36944930-36944992)
chr5 (30-102)||(36944609-36944682)
chr5 (108-178)||(36944737-36944801)
[»] chr3 (3 HSPs)
chr3 (47-103)||(18721203-18721259)
chr3 (39-102)||(38853526-38853590)
chr3 (39-75)||(45460221-45460257)
[»] chr4 (1 HSPs)
chr4 (47-94)||(47017587-47017634)
[»] chr7 (1 HSPs)
chr7 (30-102)||(17902412-17902484)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 36961667 - 36961751
Alignment:
Q  235 atatgtgtagttggtttcagaactaaaatatgattatatgtttaatcttta-tttgagaatgtcttatattgaggaattattaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36961667 atatgtgtagttggtttcagaactaaaatatgattatatgtttaatctttattttgagaatgtcttatattgaggaattattaaa 36961751  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 36961471 - 36961558
Alignment:
Q  99 aaaagaaaccagtccaaattgatgtatcatttttacatagtggtatagattcaagagaagtttaagattgttaaaattgatgaatcat 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||    
T  36961471 aaaaaaaaccagtccaaattgatgtatcatttttacatagtggtatagattcaagggaagttcaagattgttaaaattgatgtatcat 36961558  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 36961354 - 36961430
Alignment:
Q  27 tagtgtagttgaattattcttattttaatgaaatttaactattgtttaactaataatgtaaataatattagaaaaag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  36961354 tagtgtagttgaattattcttattttaatgaaatttaactattttttaattaataatgtaaataatattacaaaaag 36961430  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 36944930 - 36944992
Alignment:
Q  242 tagttggtttcagaactaaaatatgattatatgtttaatcttta-tttgagaatgtcttatat 303  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36944930 tagttggtttcagtactaaaatatgattatatgtttaatctttattttgagaatgtcttatat 36944992  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 36944609 - 36944682
Alignment:
Q  30 tgtagttgaattattcttattttaatgaaatttaactattgtttaa-ctaataatgtaaataatattagaaaaa 102  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||||  |||||||||||||||||||| |||||    
T  36944609 tgtagttgaattattctaattttaataaaatttaactattttttaatttaataatgtaaataatattataaaaa 36944682  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 36944737 - 36944801
Alignment:
Q  108 cagtccaaattgatgtatcatttttacatagtggtatagattcaagagaagtttaagattgttaaaattga 178  Q
    ||||||||||||||||||||||||||||      ||| |||||||| ||||||||||||||||||||||||    
T  36944737 cagtccaaattgatgtatcatttttaca------tattgattcaagggaagtttaagattgttaaaattga 36944801  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 18721259 - 18721203
Alignment:
Q  47 tattttaatgaaatttaactattgtttaactaataatgtaaataatattagaaaaag 103  Q
    ||||||||||| ||||||||||| ||||| ||||||| ||| |||||||| ||||||    
T  18721259 tattttaatgagatttaactattttttaattaataatttaagtaatattataaaaag 18721203  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 38853526 - 38853590
Alignment:
Q  39 attattcttattttaatgaaatttaact-attgtttaactaataatgtaaataatattagaaaaa 102  Q
    ||||||| ||||||||||| |||||||| ||| ||||| | ||||| |||||||||||| |||||    
T  38853526 attattcatattttaatgagatttaactaattttttaattgataatttaaataatattataaaaa 38853590  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 45460257 - 45460221
Alignment:
Q  39 attattcttattttaatgaaatttaactattgtttaa 75  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  45460257 attattcatattttaatgaaatttaactattttttaa 45460221  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 47017634 - 47017587
Alignment:
Q  47 tattttaatgaaatttaactattgtttaactaataatgtaaataatat 94  Q
    ||||||||||| ||||||||||| ||||| ||||||| ||||||||||    
T  47017634 tattttaatgagatttaactattttttaattaataatttaaataatat 47017587  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 17902484 - 17902412
Alignment:
Q  30 tgtagttgaattattcttattttaatgaaatttaactattgtttaactaataatgtaaataatattagaaaaa 102  Q
    |||||||||||| ||| |||| |||||| |||||||| || ||||| |||  || |||||||||||| |||||    
T  17902484 tgtagttgaattgttcctattataatgagatttaactgttttttaattaaatatttaaataatattataaaaa 17902412  T

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