View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10064_13 (Length: 316)
Name: NF10064_13
Description: NF10064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10064_13 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4741627 - 4741899
Alignment:
| Q |
1 |
tattggttcatgtaagtggaaacagaatatattgcaaagcaaaacaaaggtcccacttaggtttagatcgaaaaaaccacagacctcaagaacatgttga |
100 |
Q |
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| T |
4741627 |
tattggttcatgtaagtggaaacagaatatattgcaaagcaaaacaaaggtcccactcatgtttggatcgaaaaaaccacagacctcaaaaacttgttga |
4741726 |
T |
|
| Q |
101 |
agtagaaagttagaaactgttcatttgtgatcatcaaaacta---tttctaggtaacttaatacccaattaaactaacaaattattgggaaacttgtcac |
197 |
Q |
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| T |
4741727 |
agtagaaagttagaaactgttcatttgtcatcatcaaaactatatttttaaggtaa--ttattcccaattaaaccaacaaatcagtgggaaacttgtcac |
4741824 |
T |
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| Q |
198 |
atcatcaaaagacttgttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaa |
272 |
Q |
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| T |
4741825 |
atcattaaaagacttcttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaa |
4741899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 4742704 - 4742854
Alignment:
| Q |
2 |
attggttcatgtaagtggaaacagaatatattgcaaagcaaaacaaaggtcccacttaggtttagatcgaaaaaaccacagacctcaagaacatgttgaa |
101 |
Q |
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| T |
4742704 |
attggttcatgtgagtggaaacagaatatattgcaaagcaaa-caaaggtcccacttaggtttggatcgaaaaatccatagacctcaagaacatgttgaa |
4742802 |
T |
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| Q |
102 |
gtagaaagttagaaactgttcatttgtg--atcatcaaaactatttctaggt |
151 |
Q |
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| T |
4742803 |
gtataaagttagaaattattcagttgtgtcatcatcaaaactatttccaggt |
4742854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 4722317 - 4722374
Alignment:
| Q |
29 |
atattgcaaagcaaaacaaaggtcccacttaggtttagatcgaaaaaaccacagacct |
86 |
Q |
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| T |
4722317 |
atattgcaaagcaaaacaaaggtcccactcatgtttggatcgaaaaaaccacagacct |
4722374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 4726331 - 4726469
Alignment:
| Q |
15 |
agtggaaacagaatatattgcaaagcaaaacaaaggtcccacttaggtttagatcgaaaaaaccacagacctcaagaacatgttgaagtagaaagttaga |
114 |
Q |
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| T |
4726331 |
agtggaaacggaatatattgtaaaacaaaaaaaaggtctcactcatatttggatccaaaaaaccatagaccttgagaacatgtctaagtagaaagttgga |
4726430 |
T |
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| Q |
115 |
aactgttcatttgtgatcatcaaaactatttctaggtaa |
153 |
Q |
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| T |
4726431 |
gattgttcggttgtcatcaacaaaactacttccaggtaa |
4726469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 4721031 - 4721071
Alignment:
| Q |
232 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaa |
272 |
Q |
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| T |
4721031 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaa |
4721071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 194
Target Start/End: Original strand, 4722380 - 4722450
Alignment:
| Q |
123 |
atttgtgatcatcaaaactatttctaggtaacttaatacccaattaaactaacaaattattgggaaacttgt |
194 |
Q |
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| T |
4722380 |
atttgtcatcattaaaactatttccaggtaact-actactcaattaaaccaacaaattagtgggaaacttgt |
4722450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 4721082 - 4721112
Alignment:
| Q |
269 |
ggaaaattcaaatgtttacatcactttcact |
299 |
Q |
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| T |
4721082 |
ggaaaattcaaatgtttacatcactttcact |
4721112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 299
Target Start/End: Original strand, 4741910 - 4741940
Alignment:
| Q |
269 |
ggaaaattcaaatgtttacatcactttcact |
299 |
Q |
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| T |
4741910 |
ggaaaattcaaatgtttacatcactttcact |
4741940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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