View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10064_2 (Length: 676)
Name: NF10064_2
Description: NF10064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10064_2 |
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Alignment Details
Target: chr5 (Bit Score: 629; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 28 - 664
Target Start/End: Complemental strand, 3115520 - 3114884
Alignment:
| Q |
28 |
cacttttcacaagaaagtgggggaaatgttttcagtcttacctaaaaaacttggtggcaaaattgaaggcaaaatgtctcgtaatataaccagtgatcca |
127 |
Q |
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| T |
3115520 |
cacttttcacaagaaagtgggggaaatgttttcagtcttacctaaaaaacttggtggcaaaattgaaggcaaaatgtctcgtaatataaccagtgatcca |
3115421 |
T |
|
| Q |
128 |
tatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatcagcacttcaatgtacctgttg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115420 |
tatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatcagcacttcaatgtacctgttg |
3115321 |
T |
|
| Q |
228 |
cacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtagaaaaattatgtga |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115320 |
cacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtagaaaaattatgtga |
3115221 |
T |
|
| Q |
328 |
tggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactgaaacaattttgagcttgtcaattcagtatacacctgtt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3115220 |
tggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactgaagcaattttgagcttgtcaattcagtatacacctgtt |
3115121 |
T |
|
| Q |
428 |
gataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacatactttccacttagaaaaggtggaaaagttacactttatc |
527 |
Q |
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| T |
3115120 |
gataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacatactttccacttagaaaaggtggaaaagttacactttatc |
3115021 |
T |
|
| Q |
528 |
aagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgatttgagttatgacagtggaaattgttggcatgatatctt |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3115020 |
aagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgatttgagttatgagagtggaaattgttggcatgatatctt |
3114921 |
T |
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| Q |
628 |
tgatgcaataagtcaggcgcgacgattggtatatatt |
664 |
Q |
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| T |
3114920 |
tgatgcaataagtcaggcgcgacgattggtatatatt |
3114884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 115 - 664
Target Start/End: Complemental strand, 3121289 - 3120740
Alignment:
| Q |
115 |
aaccagtgatccatatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatcagcacttc |
214 |
Q |
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|||||||||||||||||| || |||||||| ||||||||||| ||||| ||||||| ||| || ||||| |||||||||||||||||| || || || |
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| T |
3121289 |
aaccagtgatccatatgtcacagtttctgtggctggtgctgtgattgctagaacttctgtgatcagaaatgatgagaaccctgtttggatgcaacatttt |
3121190 |
T |
|
| Q |
215 |
aatgtacctgttgcacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtag |
314 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
3121189 |
aatgtacctgttgcacatcaagcatcagagattcactttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaattccagttg |
3121090 |
T |
|
| Q |
315 |
aaaaattatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactgaaacaattttgagcttgtcaattca |
414 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||| |||||||| |
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| T |
3121089 |
aaaagttatgtgatggtgcaaaagttgaaggctttttccccattcttaatactaatggaaaacccttcaagaccgaaaccgttttgagcttatcaattca |
3120990 |
T |
|
| Q |
415 |
gtatacacctgttgataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacatactttccacttagaaaaggtggaaaa |
514 |
Q |
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|||||| ||| |||||||| || | ||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
3120989 |
gtatactcctattgataagataacgctttatagcaatggtgttggttctgattatcaaggcgttcctgctacatattttccacttagaaaaggtggaaaa |
3120890 |
T |
|
| Q |
515 |
gttacactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgatttgagttatgacagtggaaattgtt |
614 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||| ||||||||||||| |
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| T |
3120889 |
gttacactttatcaagatgctcatgttccacaaggttgtcttcctggtttgagggttgatggtggtgatcatgatgttatttatgagagtggaaattgtt |
3120790 |
T |
|
| Q |
615 |
ggcatgatatctttgatgcaataagtcaggcgcgacgattggtatatatt |
664 |
Q |
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|||| |||||||||||||||||||||||||| || |||||||| |||||| |
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| T |
3120789 |
ggcaagatatctttgatgcaataagtcaggctcgtcgattggtctatatt |
3120740 |
T |
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Back To:
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