View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10064_3 (Length: 547)
Name: NF10064_3
Description: NF10064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10064_3 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 27 - 518
Target Start/End: Original strand, 31718361 - 31718852
Alignment:
| Q |
27 |
cagtatgatattgaacttcaataactctttggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagtt |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31718361 |
cagtatgatattgaacttcaataactctttggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagtt |
31718460 |
T |
|
| Q |
127 |
aaagaaatatgaaatcaatactagacagtccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagt |
226 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31718461 |
aaagaaatatgaaatgaatactagacagtccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagt |
31718560 |
T |
|
| Q |
227 |
gacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtacacatattacctcaacaaattataatccattagttgggtggatgcatgaagcta |
326 |
Q |
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| T |
31718561 |
gacaggtttactcggtagaatatgatgcgagtgcatccgaaatgtacacatattacctcaacaaattataatccattagttgggtggatgcatgaagcta |
31718660 |
T |
|
| Q |
327 |
aaatggttgcatttaatatgcaggtatccttttttagcaaacttcaaacttataacaagaaacctgcgagatctagcacggttaatgattaataatcatt |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
31718661 |
aaatggttgcatttaatatgcaggtatccttttttagcaaacttcaaacttataacaagaaacctgcgagatctagcacggttactgattaataatgatt |
31718760 |
T |
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| Q |
427 |
gtttattttgtgtgtttttgtcttgactttcattgtggtaaggatatgagatttggattacaccttttcagttgtattaaaacattgttaat |
518 |
Q |
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| T |
31718761 |
gtttattttgtgtgtttttgtcttgactttcattgtggtaaggatatgagatttggattacaccttttcagttgtattaaaacattgttaat |
31718852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 175 - 416
Target Start/End: Original strand, 31709954 - 31710194
Alignment:
| Q |
175 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtaca |
274 |
Q |
| |
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|||||||||||||||| | |||| ||||| || |||||| | |||||| ||||||||| |||||| ||||||| ||||||| |||||||| ||||| |
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| T |
31709954 |
gatgtgttctttatttccaaatgaaatgtgagttattgacct-ctgattgttgacaggttcactcagcagaatatattgcgagtgtatccgaaaggtaca |
31710052 |
T |
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| Q |
275 |
catattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggta-tccttttttagcaaacttcaa |
373 |
Q |
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| T |
31710053 |
cgcattacctcatcaaattataatccattaattgggtggatgcatggagctcagatggttgcatttaacatgcaggtactgtttttttagcaagcttc-a |
31710151 |
T |
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| Q |
374 |
acttataacaagaaacctgcgagatctagcacggttaatgatt |
416 |
Q |
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| T |
31710152 |
atatataacaagaaacctgtgaggtctagcacggctactgatt |
31710194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 175 - 407
Target Start/End: Complemental strand, 31011383 - 31011147
Alignment:
| Q |
175 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcgagtgcatccgaaatgtaca |
274 |
Q |
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|||||||||||||||||| |||| ||||| || ||||||| ||||||| ||||||||| |||||| ||||||| ||||||| |||||||| ||||| |
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| T |
31011383 |
gatgtgttctttatttgcaaatgaaatgtgagttattgatcctctgattgttgacaggttcactcagcagaatatattgcgagtgtatccgaaaggtaca |
31011284 |
T |
|
| Q |
275 |
catattacctcaacaaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggta-----tccttttttagcaaact |
369 |
Q |
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| T |
31011283 |
cgcattacctcatcaaattataatccattaattggttggatgcatggagctcagatggttgcatttaacatgcaggtattttttatttttttagcaagct |
31011184 |
T |
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| Q |
370 |
tcaaacttataacaagaaacctgcgagatctagcacgg |
407 |
Q |
| |
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|| || |||||||||||||||| ||| |||||||||| |
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| T |
31011183 |
tc-aatatataacaagaaacctgtgaggtctagcacgg |
31011147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 31710222 - 31710286
Alignment:
| Q |
411 |
atgattaataatcattgtttattttgtgtgtttttgtcttgactttcattgtggtaaggatatgaga |
477 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||| |
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| T |
31710222 |
atgatttataatcattgtttatttcgtgc--ttttgtcttgactttcactgtggtgaggatgtgaga |
31710286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 35552268 - 35552331
Alignment:
| Q |
288 |
caaattataatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggt |
351 |
Q |
| |
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||||||||||||||||| |||||||||| |||| |||| ||||||||||||| || |||||||| |
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| T |
35552268 |
caaattataatccattaattgggtggattcatggagctcaaatggttgcattcaacatgcaggt |
35552331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 30100388 - 30100428
Alignment:
| Q |
311 |
tggatgcatgaagctaaaatggttgcatttaatatgcaggt |
351 |
Q |
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|||||||||| |||| ||||||| ||||||||||||||||| |
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| T |
30100388 |
tggatgcatggagctcaaatggtagcatttaatatgcaggt |
30100428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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