View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10064_7 (Length: 413)
Name: NF10064_7
Description: NF10064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10064_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 58 - 413
Target Start/End: Original strand, 5386051 - 5386400
Alignment:
| Q |
58 |
gaagtggcaaatactactgaaactcacacacacaactatggaattttggattcgaatccgcttgaaggcgtctaacctaacaatttcggcattccctgtt |
157 |
Q |
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| T |
5386051 |
gaagtggcaaatactactgaaactcacacacacaattatggaattttggattcgaatccgcttgaaggcgcctaacctaacaatttcggcattccctgtt |
5386150 |
T |
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| Q |
158 |
gaactagtctttacggaccaataaccacaacttacgaattaaccctaatattagttcattggaaccgattacttcctttgttgagtcgtttgaagaaatt |
257 |
Q |
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| T |
5386151 |
gaactagtctttacggaccaataaccacaacttacggattaaccctaatattagttcattggaaccgattacttcctttgttgagtcgtttgaagaaatt |
5386250 |
T |
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| Q |
258 |
ttcacgtacatattttgaattagacagatataagagctaagcagcgactaaagtatcaaataaagttgtttattctgatctaaaactacttaccccatca |
357 |
Q |
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| T |
5386251 |
ttcacgta------ttgaattagacagatataagagctaagcagtgactaaagtatcaaataaagttgtttattctgatctaaaactacttaccccatca |
5386344 |
T |
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| Q |
358 |
aaagctaaaaccaaaaaaccatttctatgacaagtttggaagtgaggcactgcttc |
413 |
Q |
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| T |
5386345 |
aaagctaaaaccaaaaaaccatttctatgacaagtttggaagtgaggcactgcttc |
5386400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 26757979 - 26758055
Alignment:
| Q |
74 |
ctgaaactcacacacacaactatggaattttggattcgaatccgcttgaaggcgtctaacctaacaatttcggcatt |
150 |
Q |
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| T |
26757979 |
ctgaaactcacacacacaactgtgatgttacgggttcgaatccgggtgaaagtgtctaacctaacaatatcggcatt |
26758055 |
T |
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