View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10064_8 (Length: 411)
Name: NF10064_8
Description: NF10064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10064_8 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 182 - 411
Target Start/End: Complemental strand, 55929670 - 55929441
Alignment:
| Q |
182 |
tatagtcttgcatatttgcaaatattttctttaacttccttagtccttacctttgttaccattatggaagcctcccctccatgggatttgtggaattcaa |
281 |
Q |
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| T |
55929670 |
tatagtcttgcatatttgcaaatattttctttaacttccttagtccttacctttgttaccattatggaagcctcccctccatgggatttgtggaattcaa |
55929571 |
T |
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| Q |
282 |
tcatttgtttaagtgggtactcacagataacatcactgttgagaacaaaaaatggctctccagaatcatctatcagcttatccctagctagagccagagg |
381 |
Q |
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| T |
55929570 |
tcatttgtttaagtgggtactcacagataacatcactgttgagaacaaaaaatggctctccagaatcatctatcagcttatccctagctagagccagagg |
55929471 |
T |
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| Q |
382 |
gcctgcagttcctaatggttcagtttcttg |
411 |
Q |
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| T |
55929470 |
gcctgcagttcctaatggttcagtttcttg |
55929441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 55929864 - 55929697
Alignment:
| Q |
14 |
aggggttcaataggtaaattccagaattgattttgttaccaacaaagaatttaggtttttcaacaaatttctcaacctgccctgttgtttcctccaacac |
113 |
Q |
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| T |
55929864 |
aggggttcaataggtaaattccagcattgattttgttaccaacaaagt-tttaggtttttcaacaaatttctcaacctgccctgctgtttcctccaacac |
55929766 |
T |
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| Q |
114 |
agccacaccatattttgatggctcatcgacctgcacaagtagatgaaaaattatatgattggatgatct |
182 |
Q |
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| T |
55929765 |
agccacaccatattttgatggctcatcaacctgcacaagtagatgaaaaattatatgattggatgatct |
55929697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 227 - 411
Target Start/End: Complemental strand, 34585486 - 34585302
Alignment:
| Q |
227 |
cttacctttgttaccattatggaagcctcccctccatgggatttgtggaattcaatcatttgtttaagtgggtactcacagataacatcactgttgagaa |
326 |
Q |
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| T |
34585486 |
cttacctttgttaccattatggaagcttcccctccatgggatttgtggaattcaatcatttctttaagtgggtagtcacttataacatcactgttaagaa |
34585387 |
T |
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| Q |
327 |
caaaaaatggctctccagaatcatctatcagcttatccctagctagagccagagggcctgcagttcctaatggttcagtttcttg |
411 |
Q |
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| T |
34585386 |
caaaaaatggctctccagagtcatctatcagcttgtccctagcaagagccaggggccctgcagttcctaatggttcagtttcttg |
34585302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 34585709 - 34585560
Alignment:
| Q |
14 |
aggggttcaataggtaaattccagaattgattttgttaccaacaaagaatttaggtttttcaacaaatttctcaacctgccctgttgtttcctccaacac |
113 |
Q |
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| T |
34585709 |
aggggttcaataggtaaattccagcattgattttgttaccaacaaacaactttggtttttcaacaaatttctcaacctgccctgttgtctcctccataac |
34585610 |
T |
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| Q |
114 |
agccacaccatattttgatggctcatcgacctgcacaagtagatgaaaaa |
163 |
Q |
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| T |
34585609 |
aaccacaccatattttgatggctcatcaacctacagaagtagacgaaaaa |
34585560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 229 - 411
Target Start/End: Complemental strand, 30921094 - 30920912
Alignment:
| Q |
229 |
tacctttgttaccattatggaagcctcccctccatgggatttgtggaattcaatcatttgtttaagtgggtactcacagataacatcactgttgagaaca |
328 |
Q |
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| T |
30921094 |
tacctttgtcaccattatggaagcttctcctccatgagatttgtggaattttatcatttctttaagtggatactcgctgataacatcgctgttgagaacg |
30920995 |
T |
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| Q |
329 |
aaaaatggctctccagaatcatctatcagcttatccctagctagagccagagggcctgcagttcctaatggttcagtttcttg |
411 |
Q |
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| T |
30920994 |
aaaaatggctcaccagagccatcaatcagcttatctctggcaagagccaagggacctgcagtccccaatggttcagtctcttg |
30920912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 30921299 - 30921150
Alignment:
| Q |
14 |
aggggttcaataggtaaattccagaattgattttgttaccaacaaagaatttaggtttttcaacaaatttctcaacctgccctgttgtttcctccaacac |
113 |
Q |
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|||||||||||||||| || |||| |||||||||||| |||||||| || || ||||| || |||||||||||||||||||| || || || |||| || |
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| T |
30921299 |
aggggttcaataggtagatcccagcattgattttgttgccaacaaacaacttgggtttctccacaaatttctcaacctgcccggtagtctcttccataac |
30921200 |
T |
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| Q |
114 |
agccacaccatattttgatggctcatcgacctgcacaagtagatgaaaaa |
163 |
Q |
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| T |
30921199 |
aactacaccatattttgatggctcatcaacctgcacaagtagttgaaaaa |
30921150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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