View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10064_9 (Length: 372)

Name: NF10064_9
Description: NF10064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10064_9
NF10064_9
[»] chr5 (12 HSPs)
chr5 (1-364)||(39169015-39169374)
chr5 (281-357)||(3299691-3299767)
chr5 (281-357)||(3392584-3392660)
chr5 (284-357)||(1163564-1163637)
chr5 (233-335)||(39400042-39400144)
chr5 (284-341)||(1850118-1850175)
chr5 (284-357)||(38987875-38987948)
chr5 (284-357)||(39726594-39726667)
chr5 (281-357)||(39879990-39880066)
chr5 (281-357)||(40418453-40418529)
chr5 (43-102)||(40418724-40418781)
chr5 (43-84)||(38988162-38988203)
[»] chr4 (2 HSPs)
chr4 (284-357)||(25912130-25912203)
chr4 (268-346)||(44444596-44444674)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 39169374 - 39169015
Alignment:
Q  1 aaacaacctatgtcttgttcttgttattggaaagtnnnnnnncataaccatgaaacagaaattgcaaattgaaagaacctaatataaatgaaaagcatct 100  Q
    |||| ||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169374 aaaccacctatgtcttgttcttgttattggaaagtaaaaaaacataaacatgaaacagaaattgcaaattgaaagaacctaatataaatgaaaagcatct 39169275  T
Q  101 tcttgttcttattattattggaatnnnnnnnnnnncatcaacgtaggttagattttttaatcttgcaactcctccaatggaacagagagtgggtcttgta 200  Q
    ||||||||||||||||||||||||            |||||| || |||| |||||||||||||||||||||||||||||||| |||    |||||||||    
T  39169274 tcttgttcttattattattggaataaaaaaaaa---atcaacataagttatattttttaatcttgcaactcctccaatggaacggag----ggtcttgta 39169182  T
Q  201 aagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169181 aagtgttctctgatggcctcaccagatgaggggtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatctt 39169082  T
Q  301 ttaaaaagagttgataatcagattcccacttatcctcaacaaca---acaattctaccatattcttc 364  Q
    |||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||| ||||||    
T  39169081 ttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttc 39169015  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 3299767 - 3299691
Alignment:
Q  281 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||    
T  3299767 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccat 3299691  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 3392660 - 3392584
Alignment:
Q  281 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||    
T  3392660 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccat 3392584  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 1163564 - 1163637
Alignment:
Q  284 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||  ||||| ||||||||    
T  1163564 gtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccat 1163637  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 39400144 - 39400042
Alignment:
Q  233 gtggtaggtttgattccggtacattgctgctactctgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccactta 332  Q
    ||||| || |||||| ||||||||||||||| |  ||||||||||| ||| | |||||  |||||||| ||| ||||||||||||||||||| |||||||    
T  39400144 gtggttgggttgatttcggtacattgctgctgcgttgaaggtgagatgagggccttgtcttagatcttctaagaagagttgataatcagattgccactta 39400045  T
Q  333 tcc 335  Q
    |||    
T  39400044 tcc 39400042  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 1850175 - 1850118
Alignment:
Q  284 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaaca 341  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  1850175 gtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaaca 1850118  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 38987948 - 38987875
Alignment:
Q  284 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| ||||||||    
T  38987948 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccat 38987875  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 39726667 - 39726594
Alignment:
Q  284 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| ||||||||    
T  39726667 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccat 39726594  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 39880066 - 39879990
Alignment:
Q  281 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    ||||| |||||||||||| || || |||||||||||||||||||||||||||||||  ||| |||||| ||||||||    
T  39880066 agtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccat 39879990  T

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Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 281 - 357
Target Start/End: Complemental strand, 40418529 - 40418453
Alignment:
Q  281 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    |||||||||||||||||| || || ||||||||||||||||||||||||||||| | || | |||||| ||||||||    
T  40418529 agtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaactctaccat 40418453  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 40418781 - 40418724
Alignment:
Q  43 cataaccatgaaacagaaattgcaaattgaaagaacctaatataaatgaaaagcatcttc 102  Q
    ||||| ||||||||| ||||||||||| |||||||||||  |||||||||||||||||||    
T  40418781 cataaacatgaaacaaaaattgcaaatagaaagaaccta--ataaatgaaaagcatcttc 40418724  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 38988203 - 38988162
Alignment:
Q  43 cataaccatgaaacagaaattgcaaattgaaagaacctaata 84  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  38988203 cataaacatgaaacagaaattgcaaatagaaagaacctaata 38988162  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 25912130 - 25912203
Alignment:
Q  284 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaacaattctaccat 357  Q
    |||||| |||||||  ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||    
T  25912130 gtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccat 25912203  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 44444596 - 44444674
Alignment:
Q  268 tgaaggtgagacgagtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttatcctcaacaacaac 346  Q
    ||||||||||| ||| | |||||| ||||| |||||| || |||| ||||||||||||| | ||||||| |||||||||    
T  44444596 tgaaggtgagatgagcggcttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaac 44444674  T

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