View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10065_high_2 (Length: 434)
Name: NF10065_high_2
Description: NF10065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10065_high_2 |
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| [»] scaffold1223 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 18563768 - 18564177
Alignment:
| Q |
17 |
caccatgtacctctacgccctcccgagtgaatcactcgacatactcccttagattttccttcttgtcttgaactatggcgttcaatgttgccatggtttt |
116 |
Q |
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| T |
18563768 |
caccatgtacctctacgccctcccgagtgaatcgctcgacgtactcccttagattttccttcttgtcttgaactatggcgttcaatgttgccatggattt |
18563867 |
T |
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| Q |
117 |
tggttgtttctgcctcacactaaagtgggaagtaaattcgtcacactattctctccaagagttgatagactcctcttcttgccctttaaccaagtcatgg |
216 |
Q |
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| T |
18563868 |
tggttgtttctgcctcatagtaaagtgggaagtaaattcgtcgcacaattctctccaagagttgatagaatcgtcttctttccctttaaccaagtaatgg |
18563967 |
T |
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| Q |
217 |
aggcaccttttagtgtcaacacaaacaacttgcacttcactgcgcctcgcacctggtggtaattgaggacggtatctaggtgttctatgtgctcgtccag |
316 |
Q |
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| T |
18563968 |
aggcaccttttagtgtcaacacaaacaacttgcacttcaccgcgcctcccacctgatggtaattaaggatggtatctaggtgttctatgtgctcgtccgg |
18564067 |
T |
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| Q |
317 |
atcggtggtgccgtcataggtctccagcttcgacggctttgtgaaaacgcgagggataaggtattatgcaacctttctggtgaatggttcattgcgacag |
416 |
Q |
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| T |
18564068 |
attaatggtgccgtcatagatctccagcttcgacggctttgcgaaaacgtgagggatagggtattatgcaacctttctggtgaatggtccattgcgacag |
18564167 |
T |
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| Q |
417 |
ctcctatgct |
426 |
Q |
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| T |
18564168 |
ctcctatgct |
18564177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 51 - 301
Target Start/End: Original strand, 21142181 - 21142432
Alignment:
| Q |
51 |
ctcgacatactcccttagattttccttcttgtcttgaactatggcgttcaatgttgccatggtttttggttgtttctgcctcacactaaagtgggaagta |
150 |
Q |
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| T |
21142181 |
ctcgacatactcccttagggtttctttcttgtcttgaacgatgacattcagggtcgtcatggtttatggttgcttccgtctcgcagtaaagtgagaagta |
21142280 |
T |
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| Q |
151 |
aattcgtcacactattctctccaagagttgatagactcctcttcttgcccttt-aaccaagtcatggaggcaccttttagtgtcaacacaaacaacttgc |
249 |
Q |
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| T |
21142281 |
aattcgtcgcacgactctctacaggagttgatagagttatcctccagccccttgaaccaagttatggcggcaccttttagcgtcaaaacaaacaattgga |
21142380 |
T |
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| Q |
250 |
acttcactgcgcctcgcacctggtggtaattgaggacggtatctaggtgttc |
301 |
Q |
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| T |
21142381 |
atttcaccacacctcgcacctggtggtaatcgaggacggtatctatgtgttc |
21142432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 301
Target Start/End: Complemental strand, 17145621 - 17145456
Alignment:
| Q |
137 |
taaagtgggaagtaaattcgtcacactattctctccaagagttgatagactcctcttcttg-ccctttaaccaagtcatggaggcaccttttagtgtcaa |
235 |
Q |
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||||||||| ||| ||||||| ||| |||| |||| ||||||||||| | ||||| | ||||| ||||||||||||| ||| ||||| |||||||| |
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| T |
17145621 |
taaagtgggtagtgaattcgttgcacagttctttccatgagttgatagagttatcttccagacccttgaaccaagtcatggtggcgcctttcagtgtcaa |
17145522 |
T |
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| Q |
236 |
cacaaacaacttgcacttcactgcgcctcgcacctggtggtaattgaggacggtatctaggtgttc |
301 |
Q |
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| T |
17145521 |
ggcgaatagtttgcacttcaccgcgcctcacgcttggtggtaatcaaggacgatatccaggtgttc |
17145456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1223 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1223
Description:
Target: scaffold1223; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 281
Target Start/End: Complemental strand, 1805 - 1574
Alignment:
| Q |
51 |
ctcgacatactcccttagattttccttcttgtcttgaactatggcgttcaatgttgccatggtttttggttgtttctgcctcacactaaagtgggaagta |
150 |
Q |
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|||||||||||||||| | |||| |||||||||||||| |||| || | || |||||| |||||||||| ||| | ||| || ||||||||||| | |
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| T |
1805 |
ctcgacatactcccttggggtttctttcttgtcttgaacaatggaatttagtgcggccatgttttttggttgcttccgtctcgcagtaaagtgggaaatg |
1706 |
T |
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| Q |
151 |
aattcgtcacactattctctccaagagttgatagactcctc-ttcttgccctttaaccaagtcatggaggcaccttttagtgtcaacacaaacaacttgc |
249 |
Q |
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| T |
1705 |
aactcgtcgcacagttctttccaggtgttgatagagtaatcatccaaccccttgaaccaggtcatggcgacacctttcagtgtcaaaacgaacaattttc |
1606 |
T |
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| Q |
250 |
acttcactgcgcctcgcacctggtggtaattg |
281 |
Q |
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| T |
1605 |
atttcactgcaccttgtccctagtggtaattg |
1574 |
T |
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