View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10065_high_6 (Length: 347)
Name: NF10065_high_6
Description: NF10065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10065_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 43579885 - 43580212
Alignment:
| Q |
4 |
aatattaaaggagttaagggtttagaagaaaaatacaaagatttgcagtagttcacccacaccatccttgttaatggggaagtctagttctaccgtcaaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
43579885 |
aatattaaaggagttaagggtttagaagaataatacaaagatttgcagtagttcatccacaccatccttgttaacgggaaagtctagttctaccgtcaaa |
43579984 |
T |
|
| Q |
104 |
gacattacaatgtcttcaatatttaatgtaatttgtttgatggttaaaacaaattactatttccctcagatacaacgattcaatccccttgagccctaaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43579985 |
gacattacaatgtcttcaatatttaatgtaatttgtttgatggttaaaacaaattactaattccctcaaatacaacgattcaatccccttgagccctaaa |
43580084 |
T |
|
| Q |
204 |
gtcttcaatatcttgatctaaccttcaacaaaccaaatcatgatcactcaagattacatgtgacttcgccaagatgatgttcttgagcactttcacaatg |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
43580085 |
gtcttcaatgtcttgatctaaccttcaacaaaccaaatcttgatcactcaagattacatgtgacttcgccaaaatgatgttcttgagcactttcaaaatg |
43580184 |
T |
|
| Q |
304 |
cttgcatgaacatcaattgacctatgct |
331 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
43580185 |
cttgcatgaacatcaattgacctatgct |
43580212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University