View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10065_low_5 (Length: 392)
Name: NF10065_low_5
Description: NF10065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10065_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 61 - 379
Target Start/End: Original strand, 32995946 - 32996260
Alignment:
| Q |
61 |
aaaaacataaatcgttgaacttacaacttttgaactaaacaaaatcaaccttgcaaaagtaattttcaaagatatttttaccaaagtaaagaattgtagt |
160 |
Q |
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| T |
32995946 |
aaaaacataaaccgttgaacttgcaacttttgaactaaacaaaatcaagcttgcaaaagtacttttcaaagagatttttaccaaagtaaagaattgtagt |
32996045 |
T |
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| Q |
161 |
cttaatcaaattcctattcaaaagtcatcatttgatcatttcaacagtaacattagtagaggtactatgagtcttccactattttgaagaaataaaaaga |
260 |
Q |
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| T |
32996046 |
gttaatcaaactcctattcaaaag---tcttttgaccattttaacagtaacattagtagaagtactatgaaccttccactattttgaagaaat-aaaaga |
32996141 |
T |
|
| Q |
261 |
attaactacaagtacagaaattacacaataacctaagaggctttacataatgtacaagttgtttatgct---aagagaagtacacaagagtttctactac |
357 |
Q |
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||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |||| || ||||||||| ||||||||| |
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| T |
32996142 |
att---tacaagtacagaaattacacaataacctaagagactttacataatgtacaagctggttatgctgagaagaaaaacacacaagagattctactac |
32996238 |
T |
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| Q |
358 |
tgcataaccaaggtctgaatct |
379 |
Q |
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|||||||||||||||| ||||| |
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| T |
32996239 |
tgcataaccaaggtcttaatct |
32996260 |
T |
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